An integrative characterization of recurrent molecular aberrations in glioblastoma genomes

TNFα regulates the localization of CD40 in lipid rafts of glioma cells

(2012) Richa Tewari et al.   MOLECULAR BIOLOGY REPORTS

Glutathione S-transferase M1, T1, and P1 polymorphisms and risk of glioma: a meta-analysis

(2012) Zuoxu Fan et al.   MOLECULAR BIOLOGY REPORTS

Comparative analysis of algorithms for integration of copy number and expression data

(2012) Riku Louhimo et al.   NATURE METHODS

A novel computational framework for simultaneous integration of multiple types of genomic data to identify microRNA-gene regulatory modules

(2011) Shihua Zhang et al.   BIOINFORMATICS

Deciphering causal and statistical relations of molecular aberrations and gene expressions in NCI-60 cell lines

(2011) Shyh-Dar Li et al.   BMC Systems Biology

Hallmarks of Cancer: The Next Generation

(2011) Douglas Hanahan et al.   CELL

Challenges in Immunotherapy Presented by the Glioblastoma Multiforme Microenvironment

(2011) Christopher Jackson et al.   Clinical & Developmental Immunology

Signal pathways in astrocytes activated by cross-talk between of astrocytes and mast cells through CD40-CD40L

(2011) Dae Kim et al.   Journal of Neuroinflammation

Network modeling of the transcriptional effects of copy number aberrations in glioblastoma

(2011) R. Jornsten et al.   Molecular Systems Biology

Axotomy-Induced miR-21 Promotes Axon Growth in Adult Dorsal Root Ganglion Neurons

(2011) Iain T. Strickland et al.   PLoS One

Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM

(2010) Charles J. Vaske et al.   BIOINFORMATICS

Identification of a CpG Island Methylator Phenotype that Defines a Distinct Subgroup of Glioma

(2010) Houtan Noushmehr et al.   CANCER CELL

Integrated Genomic Analysis Identifies Clinically Relevant Subtypes of Glioblastoma Characterized by Abnormalities in PDGFRA, IDH1, EGFR, and NF1

(2010) Roel G.W. Verhaak et al.   CANCER CELL

Inherited variation in immune genes and pathways and glioblastoma risk

(2010) Judith A. Schwartzbaum et al.   CARCINOGENESIS

An Integrated Approach to Uncover Drivers of Cancer

(2010) Uri David Akavia et al.   CELL

Implications for immunotherapy of tumor-mediated T-cell apoptosis associated with loss of the tumor suppressor PTEN in glioblastoma

(2010) James S. Waldron et al.   JOURNAL OF CLINICAL NEUROSCIENCE

CD40 is a regulator for vascular endothelial growth factor in the tumor microenvironment of glioma

(2010) Fang Xie et al.   JOURNAL OF NEUROIMMUNOLOGY

Axon growth and guidance genes identify nascent, immature, and mature olfactory sensory neurons

(2010) Jeremy C. McIntyre et al.   JOURNAL OF NEUROSCIENCE RESEARCH

Automated Network Analysis Identifies Core Pathways in Glioblastoma

(2010) Ethan Cerami et al.   PLoS One

Intrinsic Gene Expression Profiles of Gliomas Are a Better Predictor of Survival than Histology

(2009) L. A.M. Gravendeel et al.   CANCER RESEARCH

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1

(2009) David A. Barbie et al.   NATURE

The transcriptional network for mesenchymal transformation of brain tumours

(2009) Maria Stella Carro et al.   NATURE

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

A computational procedure to identify significant overlap of differentially expressed and genomic imbalanced regions in cancer datasets †

(2009) Silvio Bicciato et al.   NUCLEIC ACIDS RESEARCH

Plexin B1 is repressed by oncogenic B-Raf signaling and functions as a tumor suppressor in melanoma cells

(2009) G M Argast et al.   ONCOGENE

Glioblastoma Subclasses Can Be Defined by Activity among Signal Transduction Pathways and Associated Genomic Alterations

(2009) Cameron Brennan et al.   PLoS One

Integrated genomic profiling of endometrial carcinoma associates aggressive tumors with indicators of PI3 kinase activation

(2009) H. B. Salvesen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Expression Quantitative Trait Loci Are Highly Sensitive to Cellular Differentiation State

(2009) Alice Gerrits et al.   PLoS Genetics

Stem Cell–Related “Self-Renewal” Signature and High Epidermal Growth Factor Receptor Expression Associated With Resistance to Concomitant Chemoradiotherapy in Glioblastoma

(2008) Anastasia Murat et al.   JOURNAL OF CLINICAL ONCOLOGY

Genome-wide screening of copy number alterations and LOH events in renal cell carcinomas and integration with gene expression profile

(2008) Ingrid Cifola et al.   Molecular Cancer

Comprehensive genomic characterization defines human glioblastoma genes and core pathways

(2008) Roger McLendon et al.   NATURE

An embryonic stem cell–like gene expression signature in poorly differentiated aggressive human tumors

(2008) Ittai Ben-Porath et al.   NATURE GENETICS

PID: the Pathway Interaction Database

(2008) Carl F. Schaefer et al.   NUCLEIC ACIDS RESEARCH

An Integrated Genomic Analysis of Human Glioblastoma Multiforme

(2008) D. W. Parsons et al.   SCIENCE