Environmental shaping of codon usage and functional adaptation across microbial communities

Ecology of uncultured Prochlorococcus clades revealed through single-cell genomics and biogeographic analysis

(2012) Rex R Malmstrom et al.   ISME Journal

Draft Genome Sequence of an Antibiotic-Resistant Propionibacterium acnes Strain, PRP-38, from the Novel Type IC Cluster

(2012) A. McDowell et al.   JOURNAL OF BACTERIOLOGY

The Rhizome of the Multidrug-Resistant Enterobacter aerogenes Genome Reveals How New “Killer Bugs” Are Created because of a Sympatric Lifestyle

(2012) Seydina M. Diene et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ecological Adaptation in Bacteria: Speciation Driven by Codon Selection

(2012) Adam C. Retchless et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Shared Antibiotic Resistome of Soil Bacteria and Human Pathogens

(2012) K. J. Forsberg et al.   SCIENCE

Genome Sequence of Propionibacterium acnes Type II Strain ATCC 11828

(2011) B. Horvath et al.   JOURNAL OF BACTERIOLOGY

Complete Genome Sequence of Propionibacterium acnesType IB Strain 6609

(2011) J. Hunyadkurti et al.   JOURNAL OF BACTERIOLOGY

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

Association between translation efficiency and horizontal gene transfer within microbial communities

(2011) Tamir Tuller et al.   NUCLEIC ACIDS RESEARCH

Bacterial community assembly based on functional genes rather than species

(2011) C. Burke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Variation in global codon usage bias among prokaryotic organisms is associated with their lifestyles

(2011) Maya Botzman et al.   GENOME BIOLOGY

An Evolutionarily Conserved Mechanism for Controlling the Efficiency of Protein Translation

(2010) Tamir Tuller et al.   CELL

Unprecedented levels of horizontal gene transfer among spatially co-occurring Shewanella bacteria from the Baltic Sea

(2010) Alejandro Caro-Quintero et al.   ISME Journal

Synonymous but not the same: the causes and consequences of codon bias

(2010) Joshua B. Plotkin et al.   NATURE REVIEWS GENETICS

High Frequency of Horizontal Gene Transfer in the Oceans

(2010) L. D. McDaniel et al.   SCIENCE

Translational Selection Is Ubiquitous in Prokaryotes

(2010) Fran Supek et al.   PLoS Genetics

The Systemic Imprint of Growth and Its Uses in Ecological (Meta)Genomics

(2010) Sara Vieira-Silva et al.   PLoS Genetics

Environmental Proteomics: a Paradigm Shift in Characterizing Microbial Activities at the Molecular Level

(2009) M. Keller et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Horizontal gene transfer in evolution: facts and challenges

(2009) L. Boto   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

General Rules for Optimal Codon Choice

(2009) Ruth Hershberg et al.   PLoS Genetics

Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea

(2008) Sarah M Sowell et al.   ISME Journal

Shotgun metaproteomics of the human distal gut microbiota

(2008) Nathan C Verberkmoes et al.   ISME Journal

Horizontal gene transfer in eukaryotic evolution

(2008) Patrick J. Keeling et al.   NATURE REVIEWS GENETICS

STRING 8--a global view on proteins and their functional interactions in 630 organisms

(2008) L. J. Jensen et al.   NUCLEIC ACIDS RESEARCH

Metaproteomics Provides Functional Insight into Activated Sludge Wastewater Treatment

(2008) Paul Wilmes et al.   PLoS One

Multiple genome sequences reveal adaptations of a phototrophic bacterium to sediment microenvironments

(2008) Y. Oda et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA