Discovery of multi-dimensional modules by integrative analysis of cancer genomic data

A novel computational framework for simultaneous integration of multiple types of genomic data to identify microRNA-gene regulatory modules

(2011) Shihua Zhang et al.   BIOINFORMATICS

Deconstructing the mechanisms and consequences of TGF-β-induced EMT during cancer progression

(2011) Michael K. Wendt et al.   CELL AND TISSUE RESEARCH

The activated transforming growth factor-beta signaling pathway in peritoneal metastases is a potential therapeutic target in ovarian cancer

(2011) Shogo Yamamura et al.   INTERNATIONAL JOURNAL OF CANCER

Epigenetic Regulation of Cancer-Associated Genes in Ovarian Cancer

(2011) Mi Jeong Kwon et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Multi-cancer computational analysis reveals invasion-associated variant of desmoplastic reaction involving INHBA, THBS2 and COL11A1

(2010) Hoon Kim et al.   BMC Medical Genomics

E2F3a Is Critically Involved in Epidermal Growth Factor Receptor–Directed Proliferation in Ovarian Cancer

(2010) Daniel Reimer et al.   CANCER RESEARCH

miR-130b Promotes CD133+ Liver Tumor-Initiating Cell Growth and Self-Renewal via Tumor Protein 53-Induced Nuclear Protein 1

(2010) Stephanie Ma et al.   Cell Stem Cell

MicroRNA-130b regulates the tumour suppressor RUNX3 in gastric cancer

(2010) Kin Wai Lai et al.   EUROPEAN JOURNAL OF CANCER

TGF-β: friend or foe? The role of TGF-β/SMAD signaling in epigenetic silencing of ovarian cancer and its implication in epigenetic therapy

(2010) Jian-Liang Chou et al.   EXPERT OPINION ON THERAPEUTIC TARGETS

Epigenetic suppression of the TGF-beta pathway revealed by transcriptome profiling in ovarian cancer

(2010) N. Matsumura et al.   GENOME RESEARCH

Granulosa Cell-Expressed BMPR1A and BMPR1B Have Unique Functions in Regulating Fertility but Act Redundantly to Suppress Ovarian Tumor Development

(2010) Mark A. Edson et al.   MOLECULAR ENDOCRINOLOGY

p21-activated kinase 4 regulates ovarian cancer cell proliferation, migration, and invasion and contributes to poor prognosis in patients

(2010) M. K. Y. Siu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Bayesian Partition Method for Detecting Pleiotropic and Epistatic eQTL Modules

(2010) Wei Zhang et al.   PLoS Computational Biology

Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis

(2009) Ronglai Shen et al.   BIOINFORMATICS

Nidogen-2: A new serum biomarker for ovarian cancer

(2009) Cynthia Kuk et al.   CLINICAL BIOCHEMISTRY

MicroRNAs in ovarian carcinomas

(2009) Neetu Dahiya et al.   ENDOCRINE-RELATED CANCER

Identification and Validation of the Methylated TWIST1 and NID2 Genes through Real-Time Methylation-Specific Polymerase Chain Reaction Assays for the Noninvasive Detection of Primary Bladder Cancer in Urine Samples

(2009) Isabelle Renard et al.   EUROPEAN UROLOGY

EP300-A miRNA-regulated metastasis suppressor gene in ductal adenocarcinomas of the pancreas

(2009) Soeren Torge Mees et al.   INTERNATIONAL JOURNAL OF CANCER

Linking the ovarian cancer transcriptome and immunome

(2008) Ronald Rapberger et al.   BMC Systems Biology

Role of Hedgehog Signaling in Ovarian Cancer

(2008) R. Bhattacharya et al.   CLINICAL CANCER RESEARCH

MicroRNA Expression Profiles in Serous Ovarian Carcinoma

(2008) E. J. Nam et al.   CLINICAL CANCER RESEARCH

Comprehensive genomic characterization defines human glioblastoma genes and core pathways

(2008) Roger McLendon et al.   NATURE

A modular approach for integrative analysis of large-scale gene-expression and drug-response data

(2008) Zoltán Kutalik et al.   NATURE BIOTECHNOLOGY

Genomic and epigenetic alterations deregulate microRNA expression in human epithelial ovarian cancer

(2008) L. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA