Antibody modeling using the Prediction of ImmunoGlobulin Structure (PIGS) web server

Improving the accuracy of the structure prediction of the third hypervariable loop of the heavy chains of antibodies

(2014) Mario Abdel Messih et al.   BIOINFORMATICS

High-resolution modeling of antibody structures by a combination of bioinformatics, expert knowledge, and molecular simulations

(2014) Hiroki Shirai et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Blind prediction performance of RosettaAntibody 3.0: Grafting, relaxation, kinematic loop modeling, and full CDR optimization

(2014) Brian D. Weitzner et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Second antibody modeling assessment (AMA-II)

(2014) Juan C. Almagro et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

A Structurally Distinct Human Mycoplasma Protein that Generically Blocks Antigen-Antibody Union

(2014) R. K. Grover et al.   SCIENCE

Nanobodies: Natural Single-Domain Antibodies

(2013) Serge Muyldermans   Annual Review of Biochemistry

Broadly Neutralizing Antiviral Antibodies

(2013) Davide Corti et al.   Annual Review of Immunology

Prediction of site-specific interactions in antibody-antigen complexes: the proABC method and server

(2013) Pier Paolo Olimpieri et al.   BIOINFORMATICS

Reshaping Antibody Diversity

(2013) Feng Wang et al.   CELL

Igs Expressed by Chronic Lymphocytic Leukemia B Cells Show Limited Binding-Site Structure Variability

(2013) P. Marcatili et al.   JOURNAL OF IMMUNOLOGY

IgBLAST: an immunoglobulin variable domain sequence analysis tool

(2013) Jian Ye et al.   NUCLEIC ACIDS RESEARCH

Rational Engineering of a Human Anti-Dengue Antibody through Experimentally Validated Computational Docking

(2013) Luca Simonelli et al.   PLoS One

ABangle: characterising the VH-VL orientation in antibodies

(2013) J. Dunbar et al.   PROTEIN ENGINEERING DESIGN & SELECTION

A Systematic Comparison of Free and Bound Antibodies Reveals Binding-Related Conformational Changes

(2012) I. Sela-Culang et al.   JOURNAL OF IMMUNOLOGY

Crystal Structure and Computational Modeling of the Fab Fragment from a Protective Anti-Ricin Monoclonal Antibody

(2012) Zhiyu Zhao et al.   PLoS One

Germline VH/VL pairing in antibodies

(2012) N. Jayaram et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Computer-aided antibody design

(2012) D. Kuroda et al.   PROTEIN ENGINEERING DESIGN & SELECTION

The association of heavy and light chain variable domains in antibodies: implications for antigen specificity

(2011) Anna Chailyan et al.   FEBS Journal

Computational Docking of Antibody-Antigen Complexes, Opportunities and Pitfalls Illustrated by Influenza Hemagglutinin

(2011) Mattia Pedotti et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Developability Index: A Rapid In Silico Tool for the Screening of Antibody Aggregation Propensity

(2011) Timothy M. Lauer et al.   JOURNAL OF PHARMACEUTICAL SCIENCES

A database of immunoglobulins with integrated tools: DIGIT

(2011) A. Chailyan et al.   NUCLEIC ACIDS RESEARCH

Structural repertoire of immunoglobulin λ light chains

(2011) Anna Chailyan et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Antibody modeling assessment

(2011) Juan C. Almagro et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Stereotyped patterns of B-cell receptor in splenic marginal zone lymphoma

(2010) S. Zibellini et al.   HAEMATOLOGICA

Structure and function of immunoglobulins

(2010) Harry W. Schroeder et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

A New Clustering of Antibody CDR Loop Conformations

(2010) Benjamin North et al.   JOURNAL OF MOLECULAR BIOLOGY

Analysis and prediction of VH/VL packing in antibodies

(2010) K. R. Abhinandan et al.   PROTEIN ENGINEERING DESIGN & SELECTION

RosettaAntibody: antibody variable region homology modeling server

(2009) A. Sircar et al.   NUCLEIC ACIDS RESEARCH

Improved prediction of protein side-chain conformations with SCWRL4

(2009) Georgii G. Krivov et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

PIGS: automatic prediction of antibody structures

(2008) P. Marcatili et al.   BIOINFORMATICS

Systematic classification of CDR-L3 in antibodies: Implications of the light chain subtypes and the VL-VH interface

(2008) Daisuke Kuroda et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Multi-constraint computational design suggests that native sequences of germline antibody H3 loops are nearly optimal for conformational flexibility

(2008) Mariana Babor et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS