标题
Single-cell genomics to guide human stem cell and tissue engineering
作者
关键词
-
出版物
NATURE METHODS
Volume 15, Issue 9, Pages 661-667
出版商
Springer Nature America, Inc
发表日期
2018-08-20
DOI
10.1038/s41592-018-0113-0
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors
- (2018) Laleh Haghverdi et al. NATURE BIOTECHNOLOGY
- Integrating single-cell transcriptomic data across different conditions, technologies, and species
- (2018) Andrew Butler et al. NATURE BIOTECHNOLOGY
- Simultaneous lineage tracing and cell-type identification using CRISPR–Cas9-induced genetic scars
- (2018) Bastiaan Spanjaard et al. NATURE BIOTECHNOLOGY
- Alignment of single-cell trajectories to compare cellular expression dynamics
- (2018) Ayelet Alpert et al. NATURE METHODS
- Bias, robustness and scalability in single-cell differential expression analysis
- (2018) Charlotte Soneson et al. NATURE METHODS
- Three-dimensional intact-tissue sequencing of single-cell transcriptional states
- (2018) Xiao Wang et al. SCIENCE
- Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding
- (2018) Alexander B. Rosenberg et al. SCIENCE
- Single-cell transcriptomics of the mouse kidney reveals potential cellular targets of kidney disease
- (2018) Jihwan Park et al. SCIENCE
- Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis
- (2018) Jeffrey A. Farrell et al. SCIENCE
- Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo
- (2018) Daniel E. Wagner et al. SCIENCE
- Diverse reprogramming codes for neuronal identity
- (2018) Rachel Tsunemoto et al. NATURE
- High-Throughput Approaches to Pinpoint Function within the Noncoding Genome
- (2017) Antonino Montalbano et al. MOLECULAR CELL
- The Human Cell Atlas: from vision to reality
- (2017) Orit Rozenblatt-Rosen et al. NATURE
- Synthetic recording and in situ readout of lineage information in single cells
- (2017) Kirsten L. Frieda et al. NATURE
- Scaling single-cell genomics from phenomenology to mechanism
- (2017) Amos Tanay et al. NATURE
- Assembly of functionally integrated human forebrain spheroids
- (2017) Fikri Birey et al. NATURE
- Cell diversity and network dynamics in photosensitive human brain organoids
- (2017) Giorgia Quadrato et al. NATURE
- Single-cell spatial reconstruction reveals global division of labour in the mammalian liver
- (2017) Keren Bahar Halpern et al. NATURE
- Multiplexed droplet single-cell RNA-sequencing using natural genetic variation
- (2017) Hyun Min Kang et al. NATURE BIOTECHNOLOGY
- Cancer stem cells revisited
- (2017) Eduard Batlle et al. NATURE MEDICINE
- Fused cerebral organoids model interactions between brain regions
- (2017) Joshua A Bagley et al. NATURE METHODS
- Pooled CRISPR screening with single-cell transcriptome readout
- (2017) Paul Datlinger et al. NATURE METHODS
- Single-cell sequencing reveals dissociation-induced gene expression in tissue subpopulations
- (2017) Susanne C van den Brink et al. NATURE METHODS
- Autologous Induced Stem-Cell–Derived Retinal Cells for Macular Degeneration
- (2017) Michiko Mandai et al. NEW ENGLAND JOURNAL OF MEDICINE
- Cell population structure prior to bifurcation predicts efficiency of directed differentiation in human induced pluripotent cells
- (2017) Rhishikesh Bargaje et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex
- (2017) Tomasz J. Nowakowski et al. SCIENCE
- Spatial reconstruction of immune niches by combining photoactivatable reporters and scRNA-seq
- (2017) Chiara Medaglia et al. SCIENCE
- The promise of spatial transcriptomics for neuroscience in the era of molecular cell typing
- (2017) Ed Lein et al. SCIENCE
- Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors
- (2017) Alexandra-Chloé Villani et al. SCIENCE
- Disease Modeling in Stem Cell-Derived 3D Organoid Systems
- (2017) Devanjali Dutta et al. TRENDS IN MOLECULAR MEDICINE
- Mouse embryonic stem cells can differentiate via multiple paths to the same state
- (2017) James Alexander Briggs et al. eLife
- Molecular Diversity of Midbrain Development in Mouse, Human, and Stem Cells
- (2016) Gioele La Manno et al. CELL
- Dissecting Immune Circuits by Linking CRISPR-Pooled Screens with Single-Cell RNA-Seq
- (2016) Diego Adhemar Jaitin et al. CELL
- A Multiplexed Single-Cell CRISPR Screening Platform Enables Systematic Dissection of the Unfolded Protein Response
- (2016) Britt Adamson et al. CELL
- Brain-Region-Specific Organoids Using Mini-bioreactors for Modeling ZIKV Exposure
- (2016) Xuyu Qian et al. CELL
- Modeling Development and Disease with Organoids
- (2016) Hans Clevers CELL
- Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics
- (2016) Karthik Shekhar et al. CELL
- What’s Luck Got to Do with It: Single Cells, Multiple Fates, and Biological Nondeterminism
- (2016) Orsolya Symmons et al. MOLECULAR CELL
- Dissecting direct reprogramming from fibroblast to neuron using single-cell RNA-seq
- (2016) Barbara Treutlein et al. NATURE
- Designer matrices for intestinal stem cell and organoid culture
- (2016) Nikolce Gjorevski et al. NATURE
- A predictive computational framework for direct reprogramming between human cell types
- (2016) Owen J L Rackham et al. NATURE GENETICS
- Diffusion pseudotime robustly reconstructs lineage branching
- (2016) Laleh Haghverdi et al. NATURE METHODS
- A decade of transcription factor-mediated reprogramming to pluripotency
- (2016) Kazutoshi Takahashi et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- In Situ Transcription Profiling of Single Cells Reveals Spatial Organization of Cells in the Mouse Hippocampus
- (2016) Sheel Shah et al. NEURON
- Single-cell RNA-sequencing: The future of genome biology is now
- (2016) Simone Picelli RNA Biology
- Worries, confusion after cancer trial deaths
- (2016) J. Couzin-Frankel SCIENCE
- Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq
- (2016) I. Tirosh et al. SCIENCE
- Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons
- (2016) Naomi Habib et al. SCIENCE
- Characterizing responses to CFTR-modulating drugs using rectal organoids derived from subjects with cystic fibrosis
- (2016) Johanna F. Dekkers et al. Science Translational Medicine
- Diffusion maps for high-dimensional single-cell analysis of differentiation data
- (2015) Laleh Haghverdi et al. BIOINFORMATICS
- Organoid Models of Human and Mouse Ductal Pancreatic Cancer
- (2015) Sylvia F. Boj et al. CELL
- Molecular Identity of Human Outer Radial Glia during Cortical Development
- (2015) Alex A. Pollen et al. CELL
- Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells
- (2015) Allon M. Klein et al. CELL
- Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
- (2015) Evan Z. Macosko et al. CELL
- Direct Lineage Reprogramming: Strategies, Mechanisms, and Applications
- (2015) Jun Xu et al. Cell Stem Cell
- Directly Reprogrammed Human Neurons Retain Aging-Associated Transcriptomic Signatures and Reveal Age-Related Nucleocytoplasmic Defects
- (2015) Jerome Mertens et al. Cell Stem Cell
- Stem Cell Therapies in Clinical Trials: Progress and Challenges
- (2015) Alan Trounson et al. Cell Stem Cell
- Kidney organoids from human iPS cells contain multiple lineages and model human nephrogenesis
- (2015) Minoru Takasato et al. NATURE
- Ductal pancreatic cancer modeling and drug screening using human pluripotent stem cell– and patient-derived tumor organoids
- (2015) Ling Huang et al. NATURE MEDICINE
- Computational and analytical challenges in single-cell transcriptomics
- (2015) Oliver Stegle et al. NATURE REVIEWS GENETICS
- CellNet: Network Biology Applied to Stem Cell Engineering
- (2014) Patrick Cahan et al. CELL
- Single-Cell Trajectory Detection Uncovers Progression and Regulatory Coordination in Human B Cell Development
- (2014) Sean C. Bendall et al. CELL
- Efficient Endoderm Induction from Human Pluripotent Stem Cells by Logically Directing Signals Controlling Lineage Bifurcations
- (2014) Kyle M. Loh et al. Cell Stem Cell
- Modelling human development and disease in pluripotent stem-cell-derived gastric organoids
- (2014) Kyle W. McCracken et al. NATURE
- Clonal evolution in breast cancer revealed by single nucleus genome sequencing
- (2014) Yong Wang et al. NATURE
- Human embryonic-stem-cell-derived cardiomyocytes regenerate non-human primate hearts
- (2014) James J. H. Chong et al. NATURE
- Microfluidic organs-on-chips
- (2014) Sangeeta N Bhatia et al. NATURE BIOTECHNOLOGY
- The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
- (2014) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity
- (2014) Sébastien A Smallwood et al. NATURE METHODS
- Generation of a vascularized and functional human liver from an iPSC-derived organ bud transplant
- (2014) Takanori Takebe et al. Nature Protocols
- Spatially resolved transcriptomics and beyond
- (2014) Nicola Crosetto et al. NATURE REVIEWS GENETICS
- Chimeric Antigen Receptor T Cells for Sustained Remissions in Leukemia
- (2014) Shannon L. Maude et al. NEW ENGLAND JOURNAL OF MEDICINE
- CRISPR-Mediated Modular RNA-Guided Regulation of Transcription in Eukaryotes
- (2013) Luke A. Gilbert et al. CELL
- Cerebral organoids model human brain development and microcephaly
- (2013) Madeline A. Lancaster et al. NATURE
- Reprogramming of Pericyte-Derived Cells of the Adult Human Brain into Induced Neuronal Cells
- (2012) Marisa Karow et al. Cell Stem Cell
- Stochastic State Transitions Give Rise to Phenotypic Equilibrium in Populations of Cancer Cells
- (2011) Piyush B. Gupta et al. CELL
- Historical Origins of Transdifferentiation and Reprogramming
- (2011) Thomas Graf Cell Stem Cell
- Dopamine neurons derived from human ES cells efficiently engraft in animal models of Parkinson’s disease
- (2011) Sonja Kriks et al. NATURE
- Induction of human neuronal cells by defined transcription factors
- (2011) Zhiping P. Pang et al. NATURE
- Self-organizing optic-cup morphogenesis in three-dimensional culture
- (2011) Mototsugu Eiraku et al. NATURE
- The cancer stem cell: premises, promises and challenges
- (2011) Hans Clevers NATURE MEDICINE
- T Cells with Chimeric Antigen Receptors Have Potent Antitumor Effects and Can Establish Memory in Patients with Advanced Leukemia
- (2011) M. Kalos et al. Science Translational Medicine
- Directed differentiation of human pluripotent stem cells into intestinal tissue in vitro
- (2010) Jason R. Spence et al. NATURE
- Direct conversion of fibroblasts to functional neurons by defined factors
- (2010) Thomas Vierbuchen et al. NATURE
- mRNA-Seq whole-transcriptome analysis of a single cell
- (2009) Fuchou Tang et al. NATURE METHODS
- Stem Cells and Niches: Mechanisms That Promote Stem Cell Maintenance throughout Life
- (2008) Sean J. Morrison et al. CELL
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started