A predictive computational framework for direct reprogramming between human cell types

Transcription factor-mediated reprogramming: epigenetics and therapeutic potential

(2015) Jaber Firas et al.   IMMUNOLOGY AND CELL BIOLOGY

Transient acquisition of pluripotency during somatic cell transdifferentiation with iPSC reprogramming factors

(2015) Itay Maza et al.   NATURE BIOTECHNOLOGY

Lineage conversion induced by pluripotency factors involves transient passage through an iPSC stage

(2015) Ori Bar-Nur et al.   NATURE BIOTECHNOLOGY

Dissecting Engineered Cell Types and Enhancing Cell Fate Conversion via CellNet

(2014) Samantha A. Morris et al.   CELL

CellNet: Network Biology Applied to Stem Cell Engineering

(2014) Patrick Cahan et al.   CELL

Human Hepatocytes with Drug Metabolic Function Induced from Fibroblasts by Lineage Reprogramming

(2014) Yuanyuan Du et al.   Cell Stem Cell

Direct Conversion of Human Fibroblasts into Neuronal Restricted Progenitors

(2014) Qingjian Zou et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A promoter-level mammalian expression atlas

(2014)   NATURE

Epigenetic Landscapes Explain Partially Reprogrammed Cells and Identify Key Reprogramming Genes

(2014) Alex H. Lang et al.   PLoS Computational Biology

Transdifferentiation of human fibroblasts into hepatocyte-like cells by defined transcriptional factors

(2013) Tomomi Kogiso et al.   Hepatology International

Optimization of direct fibroblast reprogramming to cardiomyocytes using calcium activity as a functional measure of success

(2013) Russell C. Addis et al.   JOURNAL OF MOLECULAR AND CELLULAR CARDIOLOGY

Gene-pair expression signatures reveal lineage control

(2013) Merja Heinäniemi et al.   NATURE METHODS

Transcription Factors That Convert Adult Cell Identity Are Differentially Polycomb Repressed

(2013) Fred P. Davis et al.   PLoS One

A general strategy for cellular reprogramming: The importance of transcription factor cross-repression

(2013) Isaac Crespo et al.   STEM CELLS

C/EBPα Induces Highly Efficient Macrophage Transdifferentiation of B Lymphoma and Leukemia Cell Lines and Impairs Their Tumorigenicity

(2013) Francesca Rapino et al.   Cell Reports

Direct Reprogramming of Human Fibroblasts toward a Cardiomyocyte-like State

(2013) Ji-Dong Fu et al.   Stem Cell Reports

A Molecular Roadmap of Reprogramming Somatic Cells into iPS Cells

(2012) Jose M. Polo et al.   CELL

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

From Understanding the Development Landscape of the Canonical Fate-Switch Pair to Constructing a Dynamic Landscape for Two-Step Neural Differentiation

(2012) Xiaojie Qiu et al.   PLoS One

A deterministic map of Waddington's epigenetic landscape for cell fate specification

(2011) Sudin Bhattacharya et al.   BMC Systems Biology

Induction of functional hepatocyte-like cells from mouse fibroblasts by defined factors

(2011) Pengyu Huang et al.   NATURE

Direct conversion of mouse fibroblasts to hepatocyte-like cells by defined factors

(2011) Sayaka Sekiya et al.   NATURE

Direct conversion of human fibroblasts to dopaminergic neurons

(2011) U. Pfisterer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Direct Reprogramming of Fibroblasts into Functional Cardiomyocytes by Defined Factors

(2010) Masaki Ieda et al.   CELL

Direct conversion of fibroblasts to functional neurons by defined factors

(2010) Thomas Vierbuchen et al.   NATURE

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line

(2009) Harukazu Suzuki et al.   NATURE GENETICS

A census of human transcription factors: function, expression and evolution

(2009) Juan M. Vaquerizas et al.   NATURE REVIEWS GENETICS

TFCat: the curated catalog of mouse and human transcription factors

(2009) Debra L Fulton et al.   GENOME BIOLOGY

Induction of pluripotent stem cells by defined factors is greatly improved by small-molecule compounds

(2008) Danwei Huangfu et al.   NATURE BIOTECHNOLOGY