The biomass and biodiversity of the continental subsurface

The biomass distribution on Earth

(2018) Yinon M. Bar-On et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification and Removal of Contaminant Sequences From Ribosomal Gene Databases: Lessons From the Census of Deep Life

(2018) Cody S. Sheik et al.   Frontiers in Microbiology

The Martian subsurface as a potential window into the origin of life

(2017) Joseph R. Michalski et al.   Nature Geoscience

Reactivation of Deep Subsurface Microbial Community in Response to Methane or Methanol Amendment

(2017) Pauliina Rajala et al.   Frontiers in Microbiology

Metagenomic identification of active methanogens and methanotrophs in serpentinite springs of the Voltri Massif, Italy

(2017) William J. Brazelton et al.   PeerJ

Variations in microbial carbon sources and cycling in the deep continental subsurface

(2016) Danielle N. Simkus et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Reply to Willis: Powerful predictions of biodiversity from ecological models and scaling laws

(2016) Kenneth J. Locey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An oligotrophic deep-subsurface community dependent on syntrophy is dominated by sulfur-driven autotrophic denitrifiers

(2016) Maggie C. Y. Lau et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Extrapolating abundance curves has no predictive power for estimating microbial biodiversity

(2016) Amy Willis   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Scaling laws predict global microbial diversity

(2016) Kenneth J. Locey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system

(2016) Karthik Anantharaman et al.   Nature Communications

Fungal and Prokaryotic Activities in the Marine Subsurface Biosphere at Peru Margin and Canterbury Basin Inferred from RNA-Based Analyses and Microscopy

(2016) Maria G. Pachiadaki et al.   Frontiers in Microbiology

Estimating diversity via frequency ratios

(2015) Amy Willis et al.   BIOMETRICS

A metagenomic window into carbon metabolism at 3 km depth in Precambrian continental crust

(2015) Cara Magnabosco et al.   ISME Journal

Rock comminution as a source of hydrogen for subglacial ecosystems

(2015) J. Telling et al.   Nature Geoscience

Allometry of animal–microbe interactions and global census of animal-associated microbes

(2015) Thomas L. Kieft et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Active Microbial Communities Inhabit Sulphate-Methane Interphase in Deep Bedrock Fracture Fluids in Olkiluoto, Finland

(2015) Malin Bomberg et al.   Biomed Research International

Revealing the unexplored fungal communities in deep groundwater of crystalline bedrock fracture zones in Olkiluoto, Finland

(2015) Elina Sohlberg et al.   Frontiers in Microbiology

Microbial Stimulation and Succession following a Test Well Injection Simulating CO₂ Leakage into a Shallow Newark Basin Aquifer

(2015) Gregory O’Mullan et al.   PLoS One

Chemolithotrophic Primary Production in a Subglacial Ecosystem

(2014) Eric S. Boyd et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Temporal Changes in Microbial Ecology and Geochemistry in Produced Water from Hydraulically Fractured Marcellus Shale Gas Wells

(2014) Maryam A. Cluff et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Deep-biosphere consortium of fungi and prokaryotes in Eocene subseafloor basalts

(2014) S. Bengtson et al.   Geobiology

Sulphate-controlled Diversity of Subterranean Microbial Communities over Depth in Deep Groundwater with Opposing Gradients of Sulphate and Methane

(2014) Karsten Pedersen et al.   GEOMICROBIOLOGY JOURNAL

Physicochemical impacts associated with natural gas development on methanogenesis in deep sand aquifers

(2014) Taiki Katayama et al.   ISME Journal

Adaptations of Indiginous Bacteria to Fuel Contamination in Karst Aquifers in South-Central Kentucky

(2014) Tom Byl et al.   JOURNAL OF CAVE AND KARST STUDIES

A review of prokaryotic populations and processes in sub-seafloor sediments, including biosphere:geosphere interactions

(2014) R. John Parkes et al.   MARINE GEOLOGY

Chemolithotrophy in the continental deep subsurface: Sanford Underground Research Facility (SURF), USA

(2014) Magdalena R. Osburn et al.   Frontiers in Microbiology

Insights into environmental controls on microbial communities in a continental serpentinite aquifer using a microcosm-based approach

(2014) Melitza Crespo-Medina et al.   Frontiers in Microbiology

Comparisons of the composition and biogeographic distribution of the bacterial communities occupying South African thermal springs with those inhabiting deep subsurface fracture water

(2014) Cara Magnabosco et al.   Frontiers in Microbiology

Bacterial Communities Associated with Subsurface Geochemical Processes in Continental Serpentinite Springs

(2013) William J. Brazelton et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Meta-Analysis of Quantification Methods Shows that Archaea and Bacteria Have Similar Abundances in the Subseafloor

(2013) Karen G. Lloyd et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Halomonas sulfidaeris-dominated microbial community inhabits a 1.8 km-deep subsurface Cambrian Sandstone reservoir

(2013) Yiran Dong et al.   ENVIRONMENTAL MICROBIOLOGY

Thermal effects on microbial composition and microbiologically induced corrosion and mineral precipitation affecting operation of a geothermal plant in a deep saline aquifer

(2013) Stephanie Lerm et al.   EXTREMOPHILES

Weighing the deep continental biosphere

(2013) Sean McMahon et al.   FEMS MICROBIOLOGY ECOLOGY

Microbial characterization of basalt formation waters targeted for geological carbon sequestration

(2013) Heather J. Lavalleur et al.   FEMS MICROBIOLOGY ECOLOGY

Does aspartic acid racemization constrain the depth limit of the subsurface biosphere?

(2013) T. C. Onstott et al.   Geobiology

Global map of solid Earth surface heat flow

(2013) J. Huw Davies   GEOCHEMISTRY GEOPHYSICS GEOSYSTEMS

Global drivers and patterns of microbial abundance in soil

(2013) Hector M. Serna-Chavez et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Taxonomically and functionally diverse microbial communities in deep crystalline rocks of the Fennoscandian shield

(2013) Mari Nyyssönen et al.   ISME Journal

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

A Filtering Method to Generate High Quality Short Reads Using Illumina Paired-End Technology

(2013) A. Murat Eren et al.   PLoS One

The Deep Viriosphere: Assessing the Viral Impact on Microbial Community Dynamics in the Deep Subsurface

(2013) R. E. Anderson et al.   Reviews in Mineralogy & Geochemistry

Microbial and functional diversity of a subterrestrial high pH groundwater associated to serpentinization

(2012) Igor Tiago et al.   ENVIRONMENTAL MICROBIOLOGY

A global analysis of soil microbial biomass carbon, nitrogen and phosphorus in terrestrial ecosystems

(2012) Xiaofeng Xu et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Microbial communities in the subglacial waters of the Vatnajökull ice cap, Iceland

(2012) Viggó Thór Marteinsson et al.   ISME Journal

Statistical geochemistry reveals disruption in secular lithospheric evolution about 2.5 Gyr ago

(2012) C. Brenhin Keller et al.   NATURE

Endospore abundance, microbial growth and necromass turnover in deep sub-seafloor sediment

(2012) Bente Aa. Lomstein et al.   NATURE

Beyond biogeographic patterns: processes shaping the microbial landscape

(2012) China A. Hanson et al.   NATURE REVIEWS MICROBIOLOGY

Global distribution of microbial abundance and biomass in subseafloor sediment

(2012) J. Kallmeyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Incorporating 16S Gene Copy Number Information Improves Estimates of Microbial Diversity and Abundance

(2012) Steven W. Kembel et al.   PLoS Computational Biology

Compositions of microbial communities associated with oil and water in a mesothermic oil field

(2011) Yuriy Kryachko et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

On the use of log-transformation vs. nonlinear regression for analyzing biological power laws

(2011) Xiao Xiao et al.   ECOLOGY

Microbial oceanography of the dark ocean's pelagic realm

(2011) Javier Arístegui et al.   LIMNOLOGY AND OCEANOGRAPHY

Extent of the microbial biosphere in the oceanic crust

(2010) Cara Heberling et al.   GEOCHEMISTRY GEOPHYSICS GEOSYSTEMS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

First Investigation of the Microbiology of the Deepest Layer of Ocean Crust

(2010) Olivia U. Mason et al.   PLoS One

Anaerobic Oxidation of Methane: Progress with an Unknown Process

(2009) Katrin Knittel et al.   Annual Review of Microbiology

Bacteriophage lytic to Desulfovibrio aespoeensis isolated from deep groundwater

(2009) Hallgerd S C Eydal et al.   ISME Journal

Subseafloor sedimentary life in the South Pacific Gyre

(2009) Steven D'Hondt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A general framework for the distance-decay of similarity in ecological communities

(2008) Hélène Morlon et al.   ECOLOGY LETTERS

Viruses in granitic groundwater from 69 to 450 m depth of the Äspö hard rock laboratory, Sweden

(2008) Jennifer E Kyle et al.   ISME Journal

Significant contribution of Archaea to extant biomass in marine subsurface sediments

(2008) Julius S. Lipp et al.   NATURE

Environmental Genomics Reveals a Single-Species Ecosystem Deep Within Earth

(2008) D. Chivian et al.   SCIENCE

Quantitative assessment of the fungal contribution to microbial tissue in soil

(2008) R JOERGENSEN et al.   SOIL BIOLOGY & BIOCHEMISTRY