QDD version 3.1: a user-friendly computer program for microsatellite selection and primer design revisited: experimental validation of variables determining genotyping success rate

Challenges of microsatellite development in Lepidoptera: Euphydryas aurinia (Nymphalidae) as a case study

(2014) Melthide SINAMA et al.   EUROPEAN JOURNAL OF ENTOMOLOGY

Two multiplexed sets of 21 and 18 microsatellites for Phoxinus phoxinus (L.) and Gobio gobio (L.) developed by cross-species amplification

(2013) Rémi Grenier et al.   EUROPEAN JOURNAL OF WILDLIFE RESEARCH

Non-homogeneous combination of two porous genomes induces complex body shape trajectories in cyprinid hybrids

(2013) Melthide Sinama et al.   Frontiers in Zoology

Microsatellite markers from the Ion Torrent: a multi-species contrast to 454 shotgun sequencing

(2013) Carole P. Elliott et al.   Molecular Ecology Resources

Characterizing genic and nongenic molecular markers: comparison of microsatellites and SNPs

(2013) Jacquelin DeFaveri et al.   Molecular Ecology Resources

Microsatellites for Next-Generation Ecologists: A Post-Sequencing Bioinformatics Pipeline

(2013) Iria Fernandez-Silva et al.   PLoS One

HighSSR: high-throughput SSR characterization and locus development from next-gen sequencing data

(2012) Alexander Churbanov et al.   BIOINFORMATICS

Rapid Microsatellite Identification from Illumina Paired-End Genomic Sequencing in Two Birds and a Snake

(2012) Todd A. Castoe et al.   PLoS One

Breakdown of Phylogenetic Signal: A Survey of Microsatellite Densities in 454 Shotgun Sequences from 154 Non Model Eukaryote Species

(2012) Emese Meglécz et al.   PLoS One

Exploring Pandora's Box: Potential and Pitfalls of Low Coverage Genome Surveys for Evolutionary Biology

(2012) Florian Leese et al.   PLoS One

pcrEfficiency: a Web tool for PCR amplification efficiency prediction

(2011) Izaskun Mallona et al.   BMC BIOINFORMATICS

Rise of the machines - recommendations for ecologists when using next generation sequencing for microsatellite development

(2011) MICHAEL G. GARDNER et al.   Molecular Ecology Resources

Comparison of SNPs and microsatellites for fine-scale application of genetic stock identification of Chinook salmon in the Columbia River Basin

(2011) J. E. HESS et al.   Molecular Ecology Resources

Current trends in microsatellite genotyping

(2011) E. GUICHOUX et al.   Molecular Ecology Resources

High-throughput microsatellite isolation through 454 GS-FLX Titanium pyrosequencing of enriched DNA libraries

(2011) THIBAUT MALAUSA et al.   Molecular Ecology Resources

Single-nucleotide polymorphism (SNP) discovery and applications of SNP genotyping in nonmodel organisms

(2011) J. E. SEEB et al.   Molecular Ecology Resources

Representativeness of microsatellite distributions in genomes, as revealed by 454 GS-FLX Titanium pyrosequencing

(2010) Jean-Francois Martin et al.   BMC GENOMICS

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects

(2009) Emese Meglécz et al.   BIOINFORMATICS

Microsatellite discovery by deep sequencing of enriched genomic libraries

(2009) Quentin C. Santana et al.   BIOTECHNIQUES

STAMP: Extensions to the STADEN sequence analysis package for high throughput interactive microsatellite marker design

(2009) Lars Kraemer et al.   BMC BIOINFORMATICS

A set of 37 microsatellite DNA markers for genetic diversity and structure analysis of Atlantic salmonSalmo salarpopulations

(2009) N. Nikolic et al.   JOURNAL OF FISH BIOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Predicting failure rate of PCR in large genomes

(2008) Reidar Andreson et al.   NUCLEIC ACIDS RESEARCH