Rise of the machines - recommendations for ecologists when using next generation sequencing for microsatellite development

Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing

(2011) André Gilles et al.   BMC GENOMICS

Representativeness of microsatellite distributions in genomes, as revealed by 454 GS-FLX Titanium pyrosequencing

(2010) Jean-Francois Martin et al.   BMC GENOMICS

What Is a Microsatellite: A Computational and Experimental Definition Based upon Repeat Mutational Behavior at A/T and GT/AC Repeats

(2010) Yogeshwar D. Kelkar et al.   Genome Biology and Evolution

Comparative genomic analysis reveals species-dependent complexities that explain difficulties with microsatellite marker development in molluscs

(2010) C E McInerney et al.   HEREDITY

Multi-locus inference of population structure: a comparison between single nucleotide polymorphisms and microsatellites

(2010) R J Haasl et al.   HEREDITY

A Genomic Portrait of Human Microsatellite Variation

(2010) B. A. Payseur et al.   MOLECULAR BIOLOGY AND EVOLUTION

On the use of large marker panels to estimate inbreeding and relatedness: empirical and simulation studies of a pedigreed zebra finch population typed at 771 SNPs

(2010) ANNA W. SANTURE et al.   MOLECULAR ECOLOGY

QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects

(2009) Emese Meglécz et al.   BIOINFORMATICS

Multiplex Manager 1.0: a cross-platform computer program that plans and optimizes multiplex PCR

(2009) Clare E. Holleley et al.   BIOTECHNIQUES

Fast, cost-effective development of species-specific microsatellite markers by genomic sequencing

(2009) Jawad Abdelkrim et al.   BIOTECHNIQUES

Sequence determinants of human microsatellite variability

(2009) Trevor J Pemberton et al.   BMC GENOMICS

Rapid identification of thousands of copperhead snake (Agkistrodon contortrix) microsatellite loci from modest amounts of 454 shotgun genome sequence

(2009) TODD A. CASTOE et al.   Molecular Ecology Resources

Detecting short tandem repeats from genome data: opening the software black box

(2008) A. Merkel et al.   BRIEFINGS IN BIOINFORMATICS

Sequencing goes 454 and takes large-scale genomics into the wild

(2008) HANS ELLEGREN   MOLECULAR ECOLOGY

msatcommander: detection of microsatellite repeat arrays and automated, locus-specific primer design

(2007) BRANT C. FAIRCLOTH   Molecular Ecology Resources