Automated DNA-based plant identification for large-scale biodiversity assessment

Further Steps in TANGO: improved taxonomic assignment in metagenomics

(2013) D. Alonso-Alemany et al.   BIOINFORMATICS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Internal Transcribed Spacer (ITS) Region and trnhH-psbA Are Suitable Candidate Loci for DNA Barcoding of Tropical Tree Species of India

(2013) Abhinandan Mani Tripathi et al.   PLoS One

Tropical Plant–Herbivore Networks: Reconstructing Species Interactions Using DNA Barcodes

(2013) Carlos García-Robledo et al.   PLoS One

How Effective Are DNA Barcodes in the Identification of African Rainforest Trees?

(2013) Ingrid Parmentier et al.   PLoS One

Incorporating indels as phylogenetic characters: Impact for interfamilial relationships within Arctoidea (Mammalia: Carnivora)

(2012) Peng-tao Luan et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

DNA Barcoding as an Effective Tool in Improving a Digital Plant Identification System: A Case Study for the Area of Mt. Valerio, Trieste (NE Italy)

(2012) Ilaria Bruni et al.   PLoS One

Utility of the trnH–psbA Intergenic Spacer Region and Its Combinations as Plant DNA Barcodes: A Meta-Analysis

(2012) Xiaohui Pang et al.   PLoS One

Unifying concepts and mechanisms in the specificity of plant–enemy interactions

(2012) Luke G. Barrett et al.   TRENDS IN PLANT SCIENCE

Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring

(2012) Douglas W. Yu et al.   Methods in Ecology and Evolution

DNA barcoding: a new tool for palm taxonomists?

(2011) Marc L. Jeanson et al.   ANNALS OF BOTANY

SNP and gene networks construction and analysis from classification of copy number variations data

(2011) Yang Liu et al.   BMC BIOINFORMATICS

Choosing and Using a Plant DNA Barcode

(2011) Peter M. Hollingsworth et al.   PLoS One

The Roots of Diversity: Below Ground Species Richness and Rooting Distributions in a Tropical Forest Revealed by DNA Barcodes and Inverse Modeling

(2011) F. Andrew Jones et al.   PLoS One

Plant DNA Barcodes Can Accurately Estimate Species Richness in Poorly Known Floras

(2011) Craig Costion et al.   PLoS One

Performance, Accuracy, and Web Server for Evolutionary Placement of Short Sequence Reads under Maximum Likelihood

(2011) Simon A. Berger et al.   SYSTEMATIC BIOLOGY

SATé-II: Very Fast and Accurate Simultaneous Estimation of Multiple Sequence Alignments and Phylogenetic Trees

(2011) Kevin Liu et al.   SYSTEMATIC BIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Using DNA to assess errors in tropical tree identifications: How often are ecologists wrong and when does it matter?

(2010) Kyle G. Dexter et al.   ECOLOGICAL MONOGRAPHS

Restoration of dry tropical forests in Central America: A review of pattern and process

(2010) Heather P. Griscom et al.   FOREST ECOLOGY AND MANAGEMENT

Intraspecific Inversions Pose a Challenge for the trnH-psbA Plant DNA Barcode

(2010) Barbara A. Whitlock et al.   PLoS One

Diversity and endemism of woody plant species in the Equatorial Pacific seasonally dry forests

(2009) Reynaldo Linares-Palomino et al.   BIODIVERSITY AND CONSERVATION

Extent and conservation of tropical dry forests in the Americas

(2009) C.A. Portillo-Quintero et al.   BIOLOGICAL CONSERVATION

DNA barcode analysis: a comparison of phylogenetic and statistical classification methods

(2009) Frederic Austerlitz et al.   BMC BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Succession and management of tropical dry forests in the Americas: Review and new perspectives

(2009) Mauricio Quesada et al.   FOREST ECOLOGY AND MANAGEMENT

Integration of DNA barcoding into an ongoing inventory of complex tropical biodiversity

(2009) DANIEL H. JANZEN et al.   Molecular Ecology Resources

New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: thetrnL approach

(2009) ALICE VALENTINI et al.   Molecular Ecology Resources

Are plant species inherently harder to discriminate than animal species using DNA barcoding markers?

(2009) ARON J. FAZEKAS et al.   Molecular Ecology Resources

Testing plant barcoding in a sister species complex of pantropicalAcacia(Mimosoideae, Fabaceae)

(2009) NEWMASTER STEVEN G. et al.   Molecular Ecology Resources

Identification of Amazonian Trees with DNA Barcodes

(2009) Mailyn Adriana Gonzalez et al.   PLoS One

Plant DNA barcodes and a community phylogeny of a tropical forest dynamics plot in Panama

(2009) W. J. Kress et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A DNA barcode for land plants

(2009) et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework

(2008) Kazutaka Katoh et al.   BMC BIOINFORMATICS

Fast phylogenetic DNA barcoding

(2008) K. Munch et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Multiple Multilocus DNA Barcodes from the Plastid Genome Discriminate Plant Species Equally Well

(2008) Aron J. Fazekas et al.   PLoS One

DNA barcoding insect-host plant associations

(2008) J. A Jurado-Rivera et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Testing the Reliability of Genetic Methods of Species Identification via Simulation

(2008) Howard A. Ross et al.   SYSTEMATIC BIOLOGY

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY

Incorporating gaps as phylogenetic characters across eight DNA regions: Ramifications for North American Psoraleeae (Leguminosae)

(2007) Ashley N. Egan et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION