Divergent transcriptional responses to low temperature among populations of alpine and lowland species of New Zealand stick insects (Micrarchus)

Positive selection in glycolysis among Australasian stick insects

(2013) Luke T Dunning et al.   BMC EVOLUTIONARY BIOLOGY

Overwintering in New Zealand stick insects

(2013) A. B. Dennis et al.   NEW ZEALAND ENTOMOLOGIST

Investigating the molecular basis of local adaptation to thermal stress: population differences in gene expression across the transcriptome of the copepod Tigriopus californicus

(2012) Sean D Schoville et al.   BMC EVOLUTIONARY BIOLOGY

The involvement of heat shock protein and cytochrome P450 genes in response to UV-A exposure in the beetle Tribolium castaneum

(2012) Wen Sang et al.   JOURNAL OF INSECT PHYSIOLOGY

The biogeography of mitochondrial and nuclear discordance in animals

(2012) DAVID P. L. TOEWS et al.   MOLECULAR ECOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Variation in Thermal Performance among Insect Populations

(2012) Brent J. Sinclair et al.   PHYSIOLOGICAL AND BIOCHEMICAL ZOOLOGY

Combined transcriptomic and metabolomic approach uncovers molecular mechanisms of cold tolerance in a temperate flesh fly

(2012) Nicholas M. Teets et al.   PHYSIOLOGICAL GENOMICS

Reestablishment of ion homeostasis during chill-coma recovery in the cricket Gryllus pennsylvanicus

(2012) H. A. MacMillan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The conservation status of small or less well known groups of New Zealand terrestrial invertebrates

(2012) T. R. Buckley et al.   NEW ZEALAND ENTOMOLOGIST

Identification and removal of ribosomal RNA sequences from metatranscriptomes

(2011) Robert Schmieder et al.   BIOINFORMATICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Parental phase status affects the cold hardiness of progeny eggs in locusts

(2011) Hongsheng Wang et al.   FUNCTIONAL ECOLOGY

Cold tolerance and cold-induced modulation of gene expression in two Drosophila virilis group species with different distributions

(2011) L. Vesala et al.   INSECT MOLECULAR BIOLOGY

Divergent transcriptomic responses to repeated and single cold exposures in Drosophila melanogaster

(2011) J. Zhang et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Elucidating the Biochemical Overwintering Adaptations of LarvalCucujus clavipes puniceus, a Nonmodel Organism, via High Throughput Proteomics

(2011) Martin A. Carrasco et al.   JOURNAL OF PROTEOME RESEARCH

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Candidate Genes Detected in Transcriptome Studies Are Strongly Dependent on Genetic Background

(2011) Pernille Sarup et al.   PLoS One

baySeq: Empirical Bayesian methods for identifying differential expression in sequence count data

(2010) Thomas J Hardcastle et al.   BMC BIOINFORMATICS

Metabolic rate and oxidative stress in insects exposed to low temperature thermal fluctuations

(2010) L. Lalouette et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Location-Specific Responses to Thermal Stress in Larvae of the Reef-Building Coral Montastraea faveolata

(2010) Nicholas R. Polato et al.   PLoS One

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data

(2009) M. Morgan et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Surviving the cold: molecular analyses of insect cryoprotective dehydration in the Arctic springtail Megaphorura arctica (Tullberg)

(2009) Melody S Clark et al.   BMC GENOMICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Phylogeography and ecological niche modelling of the New Zealand stick insectClitarchus hookeri(White) support survival in multiple coastal refugia

(2009) Thomas R. Buckley et al.   JOURNAL OF BIOGEOGRAPHY

Identifying glacial refugia in a geographic parthenogen using palaeoclimate modelling and phylogeography: the New Zealand stick insectArgosarchus horridus(White)

(2009) THOMAS R. BUCKLEY et al.   MOLECULAR ECOLOGY

Translocation experiments with butterflies reveal limits to enhancement of poleward populations under climate change

(2009) S. L. Pelini et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The phylogenetic placement and biogeographical origins of the New Zealand stick insects (Phasmatodea)

(2009) THOMAS R. BUCKLEY et al.   SYSTEMATIC ENTOMOLOGY

MULTIPLE DIRECT TRANSITIONS FROM SEXUAL REPRODUCTION TO APOMICTIC PARTHENOGENESIS INTIMEMASTICK INSECTS

(2008) Tanja Schwander et al.   EVOLUTION

Cold hardening processes in the Antarctic springtail, Cryptopygus antarcticus: Clues from a microarray

(2008) Jelena Purać et al.   JOURNAL OF INSECT PHYSIOLOGY

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

Investigating hybridization in the parthenogenetic New Zealand stick insect Acanthoxyla (Phasmatodea) using single-copy nuclear loci

(2008) Thomas R. Buckley et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Detecting genetic responses to environmental change

(2008) Ary A. Hoffmann et al.   NATURE REVIEWS GENETICS