4.7 Article

Investigating hybridization in the parthenogenetic New Zealand stick insect Acanthoxyla (Phasmatodea) using single-copy nuclear loci

期刊

MOLECULAR PHYLOGENETICS AND EVOLUTION
卷 48, 期 1, 页码 335-349

出版社

ACADEMIC PRESS INC ELSEVIER SCIENCE
DOI: 10.1016/j.ympev.2008.02.016

关键词

hybridization; introgression; polyploidy; asexual reproduction; mitochondrial DNA; nuclear genes

向作者/读者索取更多资源

The New Zealand stick insect genus Acanthoxyla Uvarov is extremely unusual among higher taxa of animals in that all known species are obligate parthenogens. We have used a combination of the mitochondrial DNA genes cytochrome oxidase subunits I and II, 28S nuclear ribosomal RNA, and the two single-copy nuclear genes elongation factor 1 alpha and phosphoglucose isomerase to test hypotheses on the role of hybridization in the evolution of this genus. Alleles at the single-copy nuclear loci in three sampled species of Acanthoxyla were resolved by cloning the PCR products. Analysis of multilocus genotypes shows that most sampled individuals of Acanthoxyla possess three alleles at the single-copy nuclear loci, which we have interpreted to indicate triploidy. Because most of the alleles from Acanthoxyla form a monophyletic group, including sets of alleles possessed by the putative triploids, we have inferred that the extant parthenogenetic lineages formed via hybridization between species of Acanthoxyla, at least one of which must have been sexual. More recently, there have been multiple introgression events from the related species Clitarchus hookeri White, although C hookeri does not appear to be involved with the origin of parthenogenesis in Acanthoxyla. Our study demonstrates the utility of cloning alleles from multiple single-copy nuclear genes for resolving the origins of parthenogenetic lineages. (C) 2008 Elsevier Inc. All rights reserved.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.7
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Ecology

Estimating the biodiversity of terrestrial invertebrates on a forested island using DNA barcodes and metabarcoding data

Andrew Dopheide, Leah K. Tooman, Stefanie Grosser, Barbara Agabiti, Birgit Rhode, Dong Xie, Mark I. Stevens, Nicola Nelson, Thomas R. Buckley, Alexei J. Drummond, Richard D. Newcomb

ECOLOGICAL APPLICATIONS (2019)

Article Ecology

Weak premating isolation between Clitarchus stick insect species despite divergent male and female genital morphology

Shelley S. Langton-Myers, Gregory I. Holwell, Thomas R. Buckley

JOURNAL OF EVOLUTIONARY BIOLOGY (2019)

Article Ecology

Multiple lineages of hyper-diverse Zopheridae beetles survived the New Zealand Oligocene Drowning

Thomas R. Buckley, Nathan P. Lord, Ana Ramon-Laca, Julia S. Allwood, Richard A. B. Leschen

JOURNAL OF BIOGEOGRAPHY (2020)

Article Ecology

Opportunities for modern genetic technologies to maintain and enhance Aotearoa New Zealand's bioheritage

Sarah N. Inwood, Gemma M. McLaughlin, Thomas R. Buckley, Murray P. Cox, Kim M. Handley, Tammy E. Steeves, Timothy J. Strabala, Rebecca McDougal, Peter K. Dearden

NEW ZEALAND JOURNAL OF ECOLOGY (2020)

Article Evolutionary Biology

Reconstructing the nonadaptive radiation of an ancient lineage of ground-dwelling stick insects (Phasmatodea: Heteropterygidae)

Sarah Bank, Thomas R. Buckley, Thies H. Buscher, Joachim Bresseel, Jerome Constant, Mayk De Haan, Daniel Dittmar, Holger Drager, Rafhiah S. Kahar, Albert Kang, Bruno Kneubuhler, Shelley S. Langton-Myers, Sven Bradler

Summary: Stick and leaf insects are large terrestrial herbivorous arthropods known for disguising themselves as plant parts. Their evolutionary history is shaped by convergent evolution and adaptive radiations, leading to morphological and ecological diversity among different lineages.

SYSTEMATIC ENTOMOLOGY (2021)

Article Evolutionary Biology

Divergent Gene Expression Following Duplication of Meiotic Genes in the Stick Insect Clitarchus hookeri

Chen Wu, Victoria G. Twort, Richard D. Newcomb, Thomas R. Buckley

Summary: The study found several meiotic genes duplicated in the New Zealand geographic parthenogenetic stick insect, some of which are rare or unique compared to other arthropods. These genes may play important roles in the evolution of reproductive mode.

GENOME BIOLOGY AND EVOLUTION (2021)

Article Biochemistry & Molecular Biology

An exploration of assembly strategies and quality metrics on the accuracy of the rewarewa (Knightia excelsa) genome

Ann M. McCartney, Elena Hilario, Seung-Sub Choi, Joseph Guhlin, Jessica M. Prebble, Gary Houliston, Thomas R. Buckley, David Chagne

Summary: By utilizing data with varying coverage and read lengths for long read assembly, more contiguous and gene-complete genome assemblies can be achieved. It is important to develop assembly workflows based on the volume and read length of sequencing data.

MOLECULAR ECOLOGY RESOURCES (2021)

Article Mycology

Multilocus phylogenetic analysis reveals that Cyttariales is a synonym of Helotiales

Danny Haelewaters, Duckchul Park, Peter R. Johnston

Summary: Cyttaria is a unique genus that parasitizes trees in Nothofagus and Lophozonia in southern South America, Australia, and New Zealand. Genetic analysis shows that Cyttaria has an isolated position near the base of Helotiales, with a weak relationship with Polydesmia pruinosa and Chlorociboriaceae. The order Cyttariales is proposed to be a synonym of Helotiales. Nothofagus and Lophozonia in southern South America, Australia, and New Zealand. Genetic analysis shows that Cyttaria has an isolated position near the base of Helotiales, with a weak relationship with Polydesmia pruinosa and Chlorociboriaceae. The order Cyttariales is proposed to be a synonym of Helotiales.

MYCOLOGICAL PROGRESS (2021)

Article Ecology

Genetic diversity and differentiation in the leaf litter weevil Geochus politus across an urban-rural gradient

Talia Brav-Cubitt, Richard A. B. Leschen, Andrew J. Veale, Thomas R. Buckley

Summary: This study found that urban reserves have the potential to retain high biodiversity, but populations within them may have reduced genetic diversity and be genetically differentiated due to urbanisation. The research also showed that differentiation can occur even within continuous forest, indicating the influence of urbanisation and other landscape factors on gene flow between populations.

NEW ZEALAND JOURNAL OF ECOLOGY (2022)

Article Plant Sciences

Hymenotorrendiella clelandii (Leotiomycetes, Helotiales, Helotiaceae) and related species from Australia and New Zealand

Peter R. Johnston, Duckchul Park

Summary: Fungi in the class Leotiomycetes are ecologically diverse, and many species of Hymenotorrendiella are specialized to certain hosts due to an endophytic phase in their life cycle. The biology of wood-inhabiting species is still unknown, but they are found in different regions and closely related to each other. The leaf-inhabiting H. communis has an interesting life cycle where it infects living leaves and later fruits on dead leaves.

NEW ZEALAND JOURNAL OF BOTANY (2023)

Review Multidisciplinary Sciences

Key questions on the evolution and biogeography of New Zealand alpine insects

Thomas R. Buckley, Robert J. B. Hoare, Richard A. B. Leschen

Summary: New Zealand alpine environments are home to a diverse range of insect species, with different adaptations to survive in the alpine zone. The genetic basis of these adaptations is being studied.

JOURNAL OF THE ROYAL SOCIETY OF NEW ZEALAND (2024)

Article Biochemistry & Molecular Biology

Fast-tracking bespoke DNA reference database generation from museum collections for biomonitoring and conservation

Andrew Dopheide, Talia Brav-Cubitt, Anastasija Podolyan, Richard A. B. Leschen, Darren Ward, Thomas R. Buckley, Manpreet K. Dhami

Summary: The lack of locally relevant DNA reference databases limits the potential for DNA-based biodiversity monitoring. This study demonstrates a sensitive and efficient method for generating DNA barcodes from invertebrate specimens, providing a foundation for DNA-based assessments and monitoring of biodiversity.

MOLECULAR ECOLOGY RESOURCES (2022)

Editorial Material Multidisciplinary Sciences

Evolutionary biogeography of Aotearoa

Graham P. Wallis, Thomas R. Buckley

JOURNAL OF THE ROYAL SOCIETY OF NEW ZEALAND (2024)

Article Zoology

Wing pattern variation and DNA barcodes defy taxonomic splitting in the New Zealand Pimelea Looper Notoreas perornata (Walker) (Lepidoptera: Geometridae: Larentiinae): the importance of populations as conservation units

Robert J. B. Hoare, Brian H. Patrick, Thomas R. Buckley, Talia Brav-Cubitt

Summary: This study reviews the endemic Notoreas perornata complex in New Zealand. The larvae of this species feed on Pimelea spp. in fragmented and threatened shrubland habitats. Allopatric populations differ in size and wing pattern, but not in genitalia. The mitochondrial DNA gene tree shows rapid recent divergence without diagnosable lineages. Based on the results, Notoreas simplex is considered synonymous with N. perornata, and N. perornata is considered a highly diverse but monotypic species. Conservation recommendations are made for 10 populations or groups of populations that show signs of subspecific divergence based on morphology and/or DNA data.

ZOOTAXA (2023)

Article Biochemistry & Molecular Biology

Paraphyly and cryptic diversity unveils unexpected challenges in the naked lichens (Calvitimela, Lecanoromycetes, Ascomycota)

Markus Osaland Fjelde, Einar Timdal, Reidar Haugan, Mika Bendiksby

Summary: This study investigated the taxonomy of the crustose lichen genus Calvitimela using molecular phylogenetics and morphological observations. The results revealed evolutionarily old and deeply divergent lineages within Calvitimela, with overlapping morphological characters between different subgenera. Chemical characters were informative at the level of subgenera but often homoplastic at the species level. A practical taxonomy of Calvitimela was proposed based on these findings.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2024)

Article Biochemistry & Molecular Biology

Diversification of freshwater crabs on the sky islands in the Hengduan Mountains Region, China

Bo-Yang Shi, Da Pan, Kang-Qin Zhang, Tian-Yu Gu, Darren C. J. Yeo, Peter K. L. Ng, Neil Cumberlidge, Hong-Ying Sun

Summary: This study investigates the evolutionary history and speciation mechanisms of montane potamids in the Hengduan Mountains Region. The results suggest that the vicariance events of these crabs are correlated with the emergence of sky islands due to the uplift of the mountains. The mountain ridges provided corridors for their dispersal and past climatic conditions played a crucial role in their evolutionary history. The mechanisms isolating sky islands are reinforced by the climatic features of dry-hot valleys and continue to affect local diversification.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2024)

Article Biochemistry & Molecular Biology

Evolutionary history and systematics of European blind mole rats (Rodentia: Spalacidae: Nannospalax): Multilocus phylogeny and species delimitation in a puzzling group

Attila Nemeth, Edvard Mizsei, Levente Laczko, David Czaban, Zsolt Hegyeli, Szabolcs Lengyel, Gabor Csorba, Gabor Sramko

Summary: Species delimitation of European blind mole rats is challenging due to their small morphological differences and complex chromosomal evolution. This study provides a comprehensive framework to improve understanding of their evolutionary history and revise their taxonomy. The results reveal the presence of multiple superspecies and species, with distinct geographic patterns and rapid chromosomal evolution.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2024)

Article Biochemistry & Molecular Biology

Phylogenomic analyses reveal a single deep-water colonisation in Patellogastropoda

Ying Qi, Zhaoyan Zhong, Xu Liu, Xing He, Yadong Zhou, Lili Zhang, Chong Chen, Katrin Linse, Jian-Wen Qiu, Jin Sun

Summary: This study investigates the phylogenetic relationships among patellogastropod families using mitochondrial and phylogenomic data. The results show that the mitochondrial phylogeny recovers monophyly of most families, but the relationships among families are still contentious. However, a more robust family-level topology consistent with morphology is achieved by phylogenomics. Additionally, the mainly deep-water families are found to be monophyletic, suggesting a single colonization of the deep water during the Jurassic.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2024)

Article Biochemistry & Molecular Biology

A model of hybrid speciation process drawn from three new poplar species originating from distant hybridization between sections

Yu-Jie Shi, Jin -Liang Huang, Jia-Xuan Mi, Jing Li, Fan-Yu Meng, Yu Zhong, Fang He, Fei -Fei Tian, Fan Zhang, Liang-Hua Chen, Han-Bo Yang, Hong-Lin Hu, Xue-Qin Wan

Summary: Despite numerous studies on hybrid speciation, our understanding of this process remains limited. In this study, we conducted an 18-year systematic investigation on Populus taxa on the Qinghai-Tibet Plateau and discovered three new taxa that originated from distant hybridization between two different sections. These hybrid taxa demonstrate greater ecological adaptability than their ancestral species due to heterosis. We propose a hybrid speciation process model that can explain important evolutionary concerns.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2024)

Article Biochemistry & Molecular Biology

Phylogenomic position of genetically diverse phagotrophic stramenopile flagellates in the sediment-associated MAST-6 lineage and a potentially halotolerant placididean

Anna Cho, Denis Tikhonenkov, Gordon Lax, Kristina I. Prokina, Patrick J. Keeling

Summary: Unlike conspicuous ochrophytes, many small and overlooked flagellates belonging to basally branching stramenopiles remain poorly characterized at the cellular or genomic level. This study describes four new species, including two new genera, of sediment-dwelling MAST-6 and provides updated phylogenomic tree of stramenopiles. The characterization of these flagellates is important due to their phylogenetic diversity and abundance in various environments.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2024)

Article Biochemistry & Molecular Biology

Phylogenomic conflict analyses of the plastid and mitochondrial genomes via deep genome skimming highlight their independent evolutionary histories: A case study in the cinquefoil genus Potentilla sensu lato (Potentilleae, Rosaceae)

Tian-Tian Xue, Steven B. Janssens, Bin-Bin Liu, Sheng-Xiang Yu

Summary: Phylogenomic conflicts are widespread among genomic data, with most previous studies primarily focusing on nuclear datasets instead of organellar genomes. In this study, we investigated the phylogenetic conflicts within and between plastid and mitochondrial genomes using Potentilla as a case study. We found that both plastid and mitochondrial genomes divided Potentilla into eight highly supported clades, with two newly identified clades. Our results demonstrate that mitochondrial genes can fully resolve phylogenetic relationships among major clades of Potentilla and are not always linked with plastomes in evolutionary history.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2024)

Article Biochemistry & Molecular Biology

Co-phylogeny of a hyper-symbiotic system: Endosymbiotic bacteria (Gammaproteobacteria), chewing lice (Insecta: Phthiraptera) and birds (Passeriformes)

Alexandra A. Grossi, Chunpo Tian, Mengjiao Ren, Fasheng Zou, Daniel R. Gustafsson

Summary: This study suggests that the coevolutionary relationships between chewing lice, endosymbiotic bacteria, and birds are not independent, but the patterns vary depending on the analysis method used. Additionally, louse host-switching does not seem to affect bacterial strains.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2024)

Article Biochemistry & Molecular Biology

Hyper-Cryptic radiation of a tropical montane plant lineage

Ingrid Olivares, Sergio Tusso, Maria Jose Sanin, Marylaure de La Harpe, Oriane Loiseau, Jonathan Rolland, Nicolas Salamin, Michael Kessler, Kentaro K. Shimizu, Margot Paris

Summary: Traditionally, differences between species have been associated with morphological variation. However, the discovery of cryptic diversity suggests that the evolution of distinct lineages can occur without morphological differences. Through genetic analysis, we found that a tropical montane plant lineage is composed of numerous unrecognized genetic groups that are not morphologically distinct. Geographic distance and topography play a crucial role in determining the genetic divergence of these groups.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2024)