JAK/STAT signalling – an executable model assembled from molecule-centred modules demonstrating a module-oriented database concept for systems and synthetic biology

Model-driven experimental analysis of the function of SHP-2 in IL-6-induced Jak/STAT signaling

(2012) Anna Dittrich et al.   Molecular BioSystems

A framework for mapping, visualisation and automatic model creation of signal-transduction networks

(2012) Carl-Fredrik Tiger et al.   Molecular Systems Biology

The pro- and anti-inflammatory properties of the cytokine interleukin-6

(2011) Jürgen Scheller et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Standard virtual biological parts: a repository of modular modeling components for synthetic biology

(2010) M. T. Cooling et al.   BIOINFORMATICS

Snoopy--a unifying Petri net framework to investigate biomolecular networks

(2010) C. Rohr et al.   BIOINFORMATICS

An overview of the CellML API and its implementation

(2010) Andrew K Miller et al.   BMC BIOINFORMATICS

BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models

(2010) Chen Li et al.   BMC Systems Biology

Model Composition for Macromolecular Regulatory Networks

(2010) Ranjit Randhawa et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Cryo-electron tomography: methodology, developments and biological applications

(2010) D. VANHECKE et al.   JOURNAL OF MICROSCOPY

A Unique Transformation from Ordinary Differential Equations to Reaction Networks

(2010) Sylvain Soliman et al.   PLoS One

Model aggregation: a building-block approach to creating large macromolecular regulatory networks

(2009) R. Randhawa et al.   BIOINFORMATICS

Bio-PEPA: A framework for the modelling and analysis of biological systems

(2009) Federica Ciocchetta et al.   THEORETICAL COMPUTER SCIENCE

Modularization of biochemical networks based on classification of Petri net t-invariants

(2008) Eva Grafahrend-Belau et al.   BMC BIOINFORMATICS

CellML and associated tools and techniques

(2008) A. Garny et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES