标题
Guidelines for visualizing and annotating rule-based models
作者
关键词
-
出版物
Molecular BioSystems
Volume 7, Issue 10, Pages 2779
出版商
Royal Society of Chemistry (RSC)
发表日期
2011-06-07
DOI
10.1039/c1mb05077j
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Hierarchical graphs for rule-based modeling of biochemical systems
- (2011) Nathan W Lemons et al. BMC BIOINFORMATICS
- A formal MIM specification and tools for the common exchange of MIM diagrams: an XML-Based format, an API, and a validation method
- (2011) Augustin Luna et al. BMC BIOINFORMATICS
- Network architecture of signaling from uncoupled helicase-polymerase to cell cycle checkpoints and trans-lesion DNA synthesis
- (2011) Kurt W. Kohn et al. CELL CYCLE
- Modeling Multivalent Ligand-Receptor Interactions with Steric Constraints on Configurations of Cell-Surface Receptor Aggregates
- (2010) Michael I. Monine et al. BIOPHYSICAL JOURNAL
- RuleMonkey: software for stochastic simulation of rule-based models
- (2010) Joshua Colvin et al. BMC BIOINFORMATICS
- Rule-based spatial modeling with diffusing, geometrically constrained molecules
- (2010) Gerd Gruenert et al. BMC BIOINFORMATICS
- Cell Signaling by Receptor Tyrosine Kinases
- (2010) Mark A. Lemmon et al. CELL
- The Src, Syk, and Tec family kinases: Distinct types of molecular switches
- (2010) J. Michael Bradshaw CELLULAR SIGNALLING
- Intrinsic information carriers in combinatorial dynamical systems
- (2010) Russ Harmer et al. CHAOS
- Rule-based modelling and simulation of biochemical systems with molecular finite automata
- (2010) J. Yang et al. IET Systems Biology
- Shaping the response: the role of FcεRI and Syk expression levels in mast cell signalling
- (2010) A. Nag et al. IET Systems Biology
- A Detailed Mathematical Model Predicts That Serial Engagement of IgE-Fc RI Complexes Can Enhance Syk Activation in Mast Cells
- (2010) A. Nag et al. JOURNAL OF IMMUNOLOGY
- A comprehensive map of the mTOR signaling network
- (2010) Etienne Caron et al. Molecular Systems Biology
- The scaffold protein Ste5 directly controls a switch-like mating decision in yeast
- (2010) Mohan K. Malleshaiah et al. NATURE
- Efficient modeling, simulation and coarse-graining of biological complexity with NFsim
- (2010) Michael W Sneddon et al. NATURE METHODS
- Signalling ballet in space and time
- (2010) Boris N. Kholodenko et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Post-translational modifications in signal integration
- (2010) Yonathan Lissanu Deribe et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Modelling the Response of FOXO Transcription Factors to Multiple Post-Translational Modifications Made by Ageing-Related Signalling Pathways
- (2010) Graham R. Smith et al. PLoS One
- Role of the histone domain in the autoinhibition and activation of the Ras activator Son of Sevenless
- (2010) Jodi Gureasko et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Small molecule inhibition of phosphatidylinositol-3,4,5-triphosphate (PIP3) binding to pleckstrin homology domains
- (2010) B. Miao et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The internal thioester and the covalent binding properties of the complement proteins C3 and C4
- (2010) S. K. Alex Law et al. PROTEIN SCIENCE
- Predicted Functions of MdmX in Fine-Tuning the Response of p53 to DNA Damage
- (2010) Sohyoung Kim et al. PLoS Computational Biology
- Scalable Rule-Based Modelling of Allosteric Proteins and Biochemical Networks
- (2010) Julien F. Ollivier et al. PLoS Computational Biology
- Detailed Simulations of Cell Biology with Smoldyn 2.1
- (2010) Steven S. Andrews et al. PLoS Computational Biology
- Adaptable Functionality of Transcriptional Feedback in Bacterial Two-Component Systems
- (2010) J. Christian J. Ray et al. PLoS Computational Biology
- RING Domain E3 Ubiquitin Ligases
- (2009) Raymond J. Deshaies et al. Annual Review of Biochemistry
- GetBonNie for building, analyzing and sharing rule-based models
- (2009) B. Hu et al. BIOINFORMATICS
- Simulation of large-scale rule-based models
- (2009) Joshua Colvin et al. BIOINFORMATICS
- Efficient stochastic simulation of reaction–diffusion processes via direct compilation
- (2009) Mieszko Lis et al. BIOINFORMATICS
- Aggregation of Membrane Proteins by Cytosolic Cross-Linkers: Theory and Simulation of the LAT-Grb2-SOS1 System
- (2009) Ambarish Nag et al. BIOPHYSICAL JOURNAL
- Infrastructure for the life sciences: design and implementation of the UniProt website
- (2009) Eric Jain et al. BMC BIOINFORMATICS
- Cancer systems biology: a network modeling perspective
- (2009) P. K. Kreeger et al. CARCINOGENESIS
- DOG 1.0: illustrator of protein domain structures
- (2009) Jian Ren et al. CELL RESEARCH
- Tyrosine phosphorylation: thirty years and counting
- (2009) Tony Hunter CURRENT OPINION IN CELL BIOLOGY
- The Systems Biology Graphical Notation
- (2009) Nicolas Le Novère et al. NATURE BIOTECHNOLOGY
- ELM: the status of the 2010 eukaryotic linear motif resource
- (2009) Cathryn M. Gould et al. NUCLEIC ACIDS RESEARCH
- The Pfam protein families database
- (2009) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Internal coarse-graining of molecular systems
- (2009) J. Feret et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Regulatory Logic of the NF- B Signaling System
- (2009) E. O'Dea et al. Cold Spring Harbor Perspectives in Biology
- A Bipolar Clamp Mechanism for Activation of Jak-Family Protein Tyrosine Kinases
- (2009) Dipak Barua et al. PLoS Computational Biology
- Integrated analysis of breast cancer cell lines reveals unique signaling pathways
- (2009) Laura M Heiser et al. GENOME BIOLOGY
- Regulation of APC/C Activators in Mitosis and Meiosis
- (2008) Jillian A. Pesin et al. Annual Review of Cell and Developmental Biology
- Presenting and exploring biological pathways with PathVisio
- (2008) Martijn P van Iersel et al. BMC BIOINFORMATICS
- Mathematical modeling and analysis of insulin clearance in vivo
- (2008) Markus Koschorreck et al. BMC Systems Biology
- Virtual Cell modelling and simulation software environment
- (2008) I.I. Moraru et al. IET Systems Biology
- Computational Models of Tandem Src Homology 2 Domain Interactions and Application to Phosphoinositide 3-Kinase
- (2008) Dipak Barua et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Programming with models: modularity and abstraction provide powerful capabilities for systems biology
- (2008) A. Mallavarapu et al. Journal of the Royal Society Interface
- Kinetic Monte Carlo method for rule-based modeling of biochemical networks
- (2008) Jin Yang et al. PHYSICAL REVIEW E
- Apoptosis: controlled demolition at the cellular level
- (2007) Rebecca C. Taylor et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
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