Dissociation of the H3K36 demethylase Rph1 from chromatin mediates derepression of environmental stress-response genes under genotoxic stress in Saccharomyces cerevisiae

Ubiquitin and Proteasomes in Transcription

(2012) Fuqiang Geng et al.   Annual Review of Biochemistry

Reactive oxygen species (ROS) homeostasis and redox regulation in cellular signaling

(2012) Paul D. Ray et al.   CELLULAR SIGNALLING

Gene regulation by the lysine demethylase KDM4A in Drosophila

(2012) Filip Crona et al.   DEVELOPMENTAL BIOLOGY

Biology of the Heat Shock Response and Protein Chaperones: Budding Yeast (Saccharomyces cerevisiae) as a Model System

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Dynamic Changes in Nucleosome Occupancy Are Not Predictive of Gene Expression Dynamics but Are Linked to Transcription and Chromatin Regulators

(2012) D. J. Huebert et al.   MOLECULAR AND CELLULAR BIOLOGY

A conserved cell growth cycle can account for the environmental stress responses of divergent eukaryotes

(2012) Nikolai Slavov et al.   MOLECULAR BIOLOGY OF THE CELL

The DNA damage response and cancer therapy

(2012) Christopher J. Lord et al.   NATURE

Understanding the language of Lys36 methylation at histone H3

(2012) Eric J. Wagner et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Gis1 and Rph1 Regulate Glycerol and Acetate Metabolism in Glucose Depleted Yeast Cells

(2012) Jakub Orzechowski Westholm et al.   PLoS One

Systematic Dissection of Roles for Chromatin Regulators in a Yeast Stress Response

(2012) Assaf Weiner et al.   PLOS BIOLOGY

The C. elegans H3K27 Demethylase UTX-1 Is Essential for Normal Development, Independent of Its Enzymatic Activity

(2012) Julien Vandamme et al.   PLoS Genetics

The Role of Atg Proteins in Autophagosome Formation

(2011) Noboru Mizushima et al.   Annual Review of Cell and Developmental Biology

The SKP1-Cul1-F-box and Leucine-rich Repeat Protein 4 (SCF-FbxL4) Ubiquitin Ligase Regulates Lysine Demethylase 4A (KDM4A)/Jumonji Domain-containing 2A (JMJD2A) Protein

(2011) Capucine Van Rechem et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

JmjN interacts with JmjC to ensure selective proteolysis of Gis1 by the proteasome

(2011) Z. Quan et al.   MICROBIOLOGY-SGM

SCFFBXO22 Regulates Histone H3 Lysine 9 and 36 Methylation Levels by Targeting Histone Demethylase KDM4A for Ubiquitin-Mediated Proteasomal Degradation

(2011) M.-K. M. Tan et al.   MOLECULAR AND CELLULAR BIOLOGY

A Comprehensive Genomic Binding Map of Gene and Chromatin Regulatory Proteins in Saccharomyces

(2011) Bryan J. Venters et al.   MOLECULAR CELL

Controlling gene expression in response to stress

(2011) Eulàlia de Nadal et al.   NATURE REVIEWS GENETICS

The histone H3K36 demethylase Rph1/KDM4 regulates the expression of the photoreactivation gene PHR1

(2011) Chung-Yi Liang et al.   NUCLEIC ACIDS RESEARCH

Multiple Means to the Same End: The Genetic Basis of Acquired Stress Resistance in Yeast

(2011) David B. Berry et al.   PLoS Genetics

Crystal structure of the catalytic core ofSaccharomyces cerevesiaehistone demethylase Rph1: insights into the substrate specificity and catalytic mechanism

(2010) Yuanyuan Chang et al.   BIOCHEMICAL JOURNAL

The JmjN Domain of Jhd2 Is Important for Its Protein Stability, and the Plant Homeodomain (PHD) Finger Mediates Its Chromatin Association Independent of H3K4 Methylation

(2010) Fu Huang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Jmjd3 and UTX Play a Demethylase-Independent Role in Chromatin Remodeling to Regulate T-Box Family Member-Dependent Gene Expression

(2010) Sara A. Miller et al.   MOLECULAR CELL

Inducible gene expression: diverse regulatory mechanisms

(2010) Vikki M. Weake et al.   NATURE REVIEWS GENETICS

Mitochondrial reactive oxygen species regulate cellular signaling and dictate biological outcomes

(2010) Robert B. Hamanaka et al.   TRENDS IN BIOCHEMICAL SCIENCES

The Snf1 kinase and proteasome-associated Rad23 regulate UV-responsive gene expression

(2009) Staton L Wade et al.   EMBO JOURNAL

Polyubiquitination of the demethylase Jhd2 controls histone methylation and gene expression

(2009) D. P. Mersman et al.   GENES & DEVELOPMENT

Characterization of the rapamycin-sensitive phosphoproteome reveals that Sch9 is a central coordinator of protein synthesis

(2009) A. Huber et al.   GENES & DEVELOPMENT

High-resolution DNA-binding specificity analysis of yeast transcription factors

(2009) C. Zhu et al.   GENOME RESEARCH

The Transcription Activity of Gis1 Is Negatively Modulated by Proteasome-mediated Limited Proteolysis

(2009) Nianshu Zhang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Global analysis of the yeast osmotic stress response by quantitative proteomics

(2009) Boumediene Soufi et al.   Molecular BioSystems

Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes

(2009) Federico Zambelli et al.   NUCLEIC ACIDS RESEARCH

The histone deacetylase Rpd3p is required for transient changes in genomic expression in response to stress

(2009) Adriana L Alejandro-Osorio et al.   GENOME BIOLOGY

Nsf1/Ypl230w participates in transcriptional activation during non-fermentative growth and in response to salt stress in Saccharomyces cerevisiae

(2008) C. Hlynialuk et al.   MICROBIOLOGY-SGM

Stress-activated Genomic Expression Changes Serve a Preparative Role for Impending Stress in Yeast

(2008) David B. Berry et al.   MOLECULAR BIOLOGY OF THE CELL

MNL1 Regulates Weak Acid–induced Stress Responses of the Fungal Pathogen Candida albicans

(2008) Mark Ramsdale et al.   MOLECULAR BIOLOGY OF THE CELL

A Library of Yeast Transcription Factor Motifs Reveals a Widespread Function for Rsc3 in Targeting Nucleosome Exclusion at Promoters

(2008) Gwenael Badis et al.   MOLECULAR CELL

PhosphoPep—a database of protein phosphorylation sites in model organisms

(2008) Bernd Bodenmiller et al.   NATURE BIOTECHNOLOGY

Distinct roles for Khd1p in the localization and expression of bud-localized mRNAs in yeast

(2008) Y. Hasegawa et al.   RNA