GPAC—Genome Presence/Absence Compiler: A Web Application to Comparatively Visualize Multiple Genome-Level Changes

Evidence for the biogenesis of more than 1,000 novel human microRNAs

(2014) Marc R Friedländer et al.   GENOME BIOLOGY

The genome of a Mesozoic paleovirus reveals the evolution of hepatitis B viruses

(2013) Alexander Suh et al.   Nature Communications

Retrophylogenomics Place Tarsiers on the Evolutionary Branch of Anthropoids

(2013) Gerrit Hartig et al.   Scientific Reports

Mammalian NUMT insertion is non-random

(2012) Junko Tsuji et al.   NUCLEIC ACIDS RESEARCH

A Molecular Phylogeny of Living Primates

(2011) Polina Perelman et al.   PLoS Genetics

Repetitive Elements May Comprise Over Two-Thirds of the Human Genome

(2011) A. P. Jason de Koning et al.   PLoS Genetics

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

A novel web-based TinT application and the chronology of the Primate Alu retroposon activity

(2010) Gennady Churakov et al.   BMC EVOLUTIONARY BIOLOGY

PHAST and RPHAST: phylogenetic analysis with space/time models

(2010) M. J. Hubisz et al.   BRIEFINGS IN BIOINFORMATICS

jsPhyloSVG: A Javascript Library for Visualizing Interactive and Vector-Based Phylogenetic Trees on the Web

(2010) Samuel A. Smits et al.   PLoS One

The Fragmented Gene

(2009) Jürgen Brosius   Annals of the New York Academy of Sciences

Retroposed SNOfall--A mammalian-wide comparison of platypus snoRNAs

(2008) J. Schmitz et al.   GENOME RESEARCH

Numt-Mediated Double-Strand Break Repair Mitigates Deletions during Primate Genome Evolution

(2008) Einat Hazkani-Covo et al.   PLoS Genetics