Sequence Evolution Correlates with Structural Dynamics

Detecting coevolving positions in a molecule: why and how to account for phylogeny

(2011) J. Y. Dutheil   BRIEFINGS IN BIOINFORMATICS

Exploration of the relationship between topology and designability of conformations

(2011) Sumudu P. Leelananda et al.   JOURNAL OF CHEMICAL PHYSICS

A Dynamic Knockout Reveals That Conformational Fluctuations Influence the Chemical Step of Enzyme Catalysis

(2011) G. Bhabha et al.   SCIENCE

Remote Thioredoxin Recognition Using Evolutionary Conservation and Structural Dynamics

(2011) Grace W. Tang et al.   STRUCTURE

Global Dynamics of Proteins: Bridging Between Structure and Function

(2010) Ivet Bahar et al.   Annual Review of Biophysics

Stefin A displaces the occluding loop of cathepsin B only by as much as required to bind to the active site cleft

(2010) Miha Renko et al.   FEBS Journal

An Integrated View of Molecular Coevolution in Protein-Protein Interactions

(2010) S. C. Lovell et al.   MOLECULAR BIOLOGY AND EVOLUTION

An interdomain sector mediating allostery in Hsp70 molecular chaperones

(2010) Robert G Smock et al.   Molecular Systems Biology

Metal-Binding Sites Are Designed to Achieve Optimal Mechanical and Signaling Properties

(2010) Anindita Dutta et al.   STRUCTURE

Role of Hsp70 ATPase Domain Intrinsic Dynamics and Sequence Evolution in Enabling its Functional Interactions with NEFs

(2010) Ying Liu et al.   PLoS Computational Biology

Correction for phylogeny, small number of observations and data redundancy improves the identification of coevolving amino acid pairs using mutual information

(2009) C. M. Buslje et al.   BIOINFORMATICS

Linking folding and binding

(2009) Peter E Wright et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Evolutionary Expansion and Specialization of the PDZ Domains

(2009) O. Sakarya et al.   MOLECULAR BIOLOGY AND EVOLUTION

Correlated Mutation Analysis on the Catalytic Domains of Serine/Threonine Protein Kinases

(2009) Feng Xu et al.   PLoS One

The intrinsic dynamics of enzymes plays a dominant role in determining the structural changes induced upon inhibitor binding

(2009) A. Bakan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Allosteric Transitions of Supramolecular Systems Explored by Network Models: Application to Chaperonin GroEL

(2009) Zheng Yang et al.   PLoS Computational Biology

Analysis of correlated mutations in HIV-1 protease using spectral clustering

(2008) Ying Liu et al.   BIOINFORMATICS

Restricted Mobility of Conserved Residues in Protein-Protein Interfaces in Molecular Simulations

(2008) Osman N. Yogurtcu et al.   BIOPHYSICAL JOURNAL

Insights into protein flexibility: The relationship between normal modes and conformational change upon protein-protein docking

(2008) S. E. Dobbins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Correspondences between low-energy modes in enzymes: Dynamics-based alignment of enzymatic functional families

(2008) Andrea Zen et al.   PROTEIN SCIENCE