Mass Spectrometry-based Workflow for Accurate Quantification ofEscherichia coliEnzymes: How Proteomics Can Play a Key Role in Metabolic Engineering

A model of yeast glycolysis based on a consistent kinetic characterisation of all its enzymes

(2013) Kieran Smallbone et al.   FEBS LETTERS

Escherichia coli achieves faster growth by increasing catalytic and translation rates of proteins

(2013) Kaspar Valgepea et al.   Molecular BioSystems

Genome-scale models of metabolism and gene expression extend and refine growth phenotype prediction

(2013) E. J. O{middle dot}Brien et al.   Molecular Systems Biology

Quantitative mass spectrometry in proteomics: critical review update from 2007 to the present

(2012) Marcus Bantscheff et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Whyin vivomay not equalin vitro- new effectors revealed by measurement of enzymatic activities under the samein vivo-like assay conditions

(2012) Rodolfo García-Contreras et al.   FEBS Journal

Recent developments in liquid chromatography–mass spectrometry and related techniques

(2012) Michal Holčapek et al.   JOURNAL OF CHROMATOGRAPHY A

Introducing AAA-MS, a Rapid and Sensitive Method for Amino Acid Analysis Using Isotope Dilution and High-Resolution Mass Spectrometry

(2012) Mathilde Louwagie et al.   JOURNAL OF PROTEOME RESEARCH

Systems metabolic engineering, industrial biotechnology and microbial cell factories

(2012) Sang-Yup Lee et al.   Microbial Cell Factories

Recent advances in engineering the central carbon metabolism of industrially important bacteria

(2012) Maria Papagianni   Microbial Cell Factories

Mass spectrometry-based absolute protein quantification: PSAQ™ strategy makes use of “noncanonical” proteotypic peptides

(2012) Michel Jaquinod et al.   PROTEOMICS

The Moderately Efficient Enzyme: Evolutionary and Physicochemical Trends Shaping Enzyme Parameters

(2011) Arren Bar-Even et al.   BIOCHEMISTRY

Identification of metabolic network models from incomplete high-throughput datasets

(2011) Sara Berthoumieux et al.   BIOINFORMATICS

Regulation and control of metabolic fluxes in microbes

(2011) Luca Gerosa et al.   CURRENT OPINION IN BIOTECHNOLOGY

Identification and Quantification of DNA Repair Proteins by Liquid Chromatography/Isotope-Dilution Tandem Mass Spectrometry Using Their Fully15N-Labeled Analogues as Internal Standards

(2011) Miral Dizdaroglu et al.   JOURNAL OF PROTEOME RESEARCH

Accurate Quantification of Cardiovascular Biomarkers in Serum Using Protein Standard Absolute Quantification (PSAQ™) and Selected Reaction Monitoring

(2011) Céline Huillet et al.   MOLECULAR & CELLULAR PROTEOMICS

Absolute Quantification of the Glycolytic Pathway in Yeast:

(2011) Kathleen M. Carroll et al.   MOLECULAR & CELLULAR PROTEOMICS

Synergies between synthetic biology and metabolic engineering

(2011) Jens Nielsen et al.   NATURE BIOTECHNOLOGY

Condition-Dependent Cell Volume and Concentration of Escherichia coli to Facilitate Data Conversion for Systems Biology Modeling

(2011) Benjamin Volkmer et al.   PLoS One

Stress-induced evolution of Escherichia coli points to original concepts in respiratory cofactor selectivity

(2011) C. Auriol et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

One-step purification of a functional, constitutively activated form of visual arrestin

(2011) Li Huang et al.   PROTEIN EXPRESSION AND PURIFICATION

Global absolute quantification of a proteome: Challenges in the deployment of a QconCAT strategy

(2011) Philip Brownridge et al.   PROTEOMICS

Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model

(2010) K. Yizhak et al.   BIOINFORMATICS

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

(2010) Brendan MacLean et al.   BIOINFORMATICS

Full Dynamic Range Proteome Analysis of S. cerevisiae by Targeted Proteomics

(2009) Paola Picotti et al.   CELL

Isotope dilution strategies for absolute quantitative proteomics

(2009) Virginie Brun et al.   Journal of Proteomics

Metabolic engineering of a reduced-genome strain of Escherichia coli for L-threonine production

(2009) Jun Lee et al.   Microbial Cell Factories

Multiple Reaction Monitoring-based, Multiplexed, Absolute Quantitation of 45 Proteins in Human Plasma

(2009) Michael A. Kuzyk et al.   MOLECULAR & CELLULAR PROTEOMICS

Protein abundance profiling of the Escherichia coli cytosol

(2008) Yasushi Ishihama et al.   BMC GENOMICS

Selected reaction monitoring for quantitative proteomics: a tutorial

(2008) Vinzenz Lange et al.   Molecular Systems Biology

The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli

(2008) Adam M Feist et al.   NATURE BIOTECHNOLOGY

The interface between biomarker discovery and clinical validation: The tar pit of the protein biomarker pipeline

(2008) Amanda G. Paulovich et al.   Proteomics Clinical Applications