Systemic Cold Stress Adaptation ofChlamydomonas reinhardtii

Sensing nutrient and energy status by SnRK1 and TOR kinases

(2012) Christophe Robaglia et al.   CURRENT OPINION IN PLANT BIOLOGY

Drought, salt, and temperature stress-induced metabolic rearrangements and regulatory networks

(2012) J. Krasensky et al.   JOURNAL OF EXPERIMENTAL BOTANY

The different proteomes of Chlamydomonas reinhardtii

(2012) Luis Valledor et al.   Journal of Proteomics

COVAIN: a toolbox for uni- and multivariate statistics, time-series and correlation network analysis and inverse estimation of the differential Jacobian from metabolomics covariance data

(2012) Xiaoliang Sun et al.   Metabolomics

System Response of Metabolic Networks inChlamydomonas reinhardtiito Total Available Ammonium

(2012) Do Yup Lee et al.   MOLECULAR & CELLULAR PROTEOMICS

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Reactive Oxygen Species and Autophagy in Plants and Algae

(2012) M. E. Perez-Perez et al.   PLANT PHYSIOLOGY

ProMEX – a mass spectral reference database for plant proteomics

(2012) Stefanie Wienkoop et al.   Frontiers in Plant Science

Algal Functional Annotation Tool: a web-based analysis suite to functionally interpret large gene lists using integrated annotation and expression data

(2011) David Lopez et al.   BMC BIOINFORMATICS

Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences

(2011) Bo Liu et al.   BMC GENOMICS

Regulation of abiotic stress signal transduction by E3 ubiquitin ligases in Arabidopsis

(2011) Jae-Hoon Lee et al.   MOLECULES AND CELLS

AMPK and mTOR regulate autophagy through direct phosphorylation of Ulk1

(2011) Joungmok Kim et al.   NATURE CELL BIOLOGY

Cold acclimation induces changes in Arabidopsis tonoplast protein abundance and activity and alters phosphorylation of tonoplast monosaccharide transporters

(2011) Waltraud X. Schulze et al.   PLANT JOURNAL

Time-Course Global Expression Profiles of Chlamydomonas reinhardtii during Photo-Biological H2 Production

(2011) Anh Vu Nguyen et al.   PLoS One

Concerted action of the new Genomic Peptide Finder and AUGUSTUS allows for automated proteogenomic annotation of the Chlamydomonas reinhardtii genome

(2011) Michael Specht et al.   PROTEOMICS

Metabolite changes with induction ofCuscutahaustorium and translocation from host plants

(2011) Takeshi Furuhashi et al.   Journal of Plant Interactions

Back to the basics: Maximizing the information obtained by quantitative two dimensional gel electrophoresis analyses by an appropriate experimental design and statistical analyses

(2010) Luis Valledor et al.   Journal of Proteomics

Targeted proteomics for Chlamydomonas reinhardtii combined with rapid subcellular protein fractionation, metabolomics and metabolic flux analyses

(2010) Stefanie Wienkoop et al.   Molecular BioSystems

Integration of metabolomics and proteomics in molecular plant physiology - coping with the complexity by data-dimensionality reduction

(2010) Wolfram Weckwerth   PHYSIOLOGIA PLANTARUM

Light and Low-CO2-Dependent LCIB–LCIC Complex Localization in the Chloroplast Supports the Carbon-Concentrating Mechanism in Chlamydomonas reinhardtii

(2010) Takashi Yamano et al.   PLANT AND CELL PHYSIOLOGY

A Metabolomic Approach to Study Major Metabolite Changes during Acclimation to Limiting CO 2 in Chlamydomonas reinhardtii

(2010) Linda Renberg et al.   PLANT PHYSIOLOGY

Cold-induced responses in annual bluegrass genotypes with differential resistance to pink snow mold (Microdochium nivale)

(2010) Annick Bertrand et al.   PLANT SCIENCE

Urea metabolism in plants

(2010) Claus-Peter Witte   PLANT SCIENCE

Spectral counting robust on high mass accuracy mass spectrometers

(2010) Wolfgang Hoehenwarter et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Autophagy is required for tolerance of drought and salt stress in plants

(2009) Yimo Liu et al.   Autophagy

Snf1-related protein kinases (SnRKs) act within an intricate network that links metabolic and stress signalling in plants

(2009) Nigel G. Halford et al.   BIOCHEMICAL JOURNAL

Sparse canonical methods for biological data integration: application to a cross-platform study

(2009) Kim-Anh Lê Cao et al.   BMC BIOINFORMATICS

The making of a chloroplast

(2009) Mark T Waters et al.   EMBO JOURNAL

Cold stress and acclimation - what is important for metabolic adjustment?

(2009) A. Janská et al.   PLANT BIOLOGY

SnRK1 Isoforms AKIN10 and AKIN11 Are Differentially Regulated in Arabidopsis Plants under Phosphate Starvation

(2009) S. Fragoso et al.   PLANT PHYSIOLOGY

Cellular stress and RNA splicing

(2009) Giuseppe Biamonti et al.   TRENDS IN BIOCHEMICAL SCIENCES

The Ferredoxin/Thioredoxin System of Oxygenic Photosynthesis

(2008) Peter Schürmann et al.   ANTIOXIDANTS & REDOX SIGNALING

Fatty acid unsaturation, mobilization, and regulation in the response of plants to stress

(2008) Robert G. Upchurch   BIOTECHNOLOGY LETTERS

Quantitative expression analysis of selected COR genes reveals their differential expression in leaf and crown tissues of wheat (Triticum aestivum L.) during an extended low temperature acclimation regimen

(2008) Seedhabadee Ganeshan et al.   JOURNAL OF EXPERIMENTAL BOTANY

Trehalose Biosynthesis in Response to Abiotic Stresses

(2008) Mihaela Iordachescu et al.   Journal of Integrative Plant Biology

Integration of Metabolomic and Proteomic Phenotypes

(2008) Stefanie Wienkoop et al.   MOLECULAR & CELLULAR PROTEOMICS

Functional characterization of two cold shock domain proteins from Oryza sativa

(2008) VIJAY CHAIKAM et al.   PLANT CELL AND ENVIRONMENT

Comparative analysis of leaf-type ferredoxin-NADP+oxidoreductase isoforms inArabidopsis thaliana

(2008) Minna Lintala et al.   PLANT JOURNAL

Global Transcript Levels Respond to Small Changes of the Carbon Status during Progressive Exhaustion of Carbohydrates in Arabidopsis Rosettes

(2008) B. Usadel et al.   PLANT PHYSIOLOGY

Convergent energy and stress signaling

(2008) Elena Baena-González et al.   TRENDS IN PLANT SCIENCE