Integrating transcriptomic techniques and k-means clustering in metabolomics to identify markers of abiotic and biotic stress in Medicago truncatula

Improved batch correction in untargeted MS-based metabolomics

(2016) Ron Wehrens et al.   Metabolomics

A batch correction method for liquid chromatography–mass spectrometry data that does not depend on quality control samples

(2016) Martin Rusilowicz et al.   Metabolomics

Time-Series Transcriptomics Reveals That AGAMOUS-LIKE22 Affects Primary Metabolism and Developmental Processes in Drought-Stressed Arabidopsis

(2016) Ulrike Bechtold et al.   PLANT CELL

The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences

(2016) Nirav Merchant et al.   PLOS BIOLOGY

Effects of Drought-Stress on Fusarium Crown Rot Development in Barley

(2016) Xinlun Liu et al.   PLoS One

Phenotypic and metabolic responses to drought and salinity of four contrasting lentil accessions

(2015) A. Muscolo et al.   JOURNAL OF EXPERIMENTAL BOTANY

Computational and statistical analysis of metabolomics data

(2015) Sheng Ren et al.   Metabolomics

Rapid and Efficient Estimation of Pea Resistance to the Soil-Borne Pathogen Fusarium oxysporum by Infrared Imaging

(2015) Nicolas Rispail et al.   SENSORS

NbClust: AnRPackage for Determining the Relevant Number of Clusters in a Data Set

(2015) Malika Charrad et al.   Journal of Statistical Software

Abiotic Stress Responses in Legumes: Strategies Used to Cope with Environmental Challenges

(2014) Susana S. Araújo et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Flavonoids as Important Molecules of Plant Interactions with the Environment

(2014) Justyna Mierziak et al.   MOLECULES

A Metabolic Profiling Strategy for the Dissection of Plant Defense against Fungal Pathogens

(2014) Konstantinos A. Aliferis et al.   PLoS One

High specificity in plant leaf metabolic responses to arbuscular mycorrhiza

(2014) Rabea Schweiger et al.   Nature Communications

Jasmonate signaling in plant development and defense response to multiple (a)biotic stresses

(2013) Angelo Santino et al.   PLANT CELL REPORTS

The role of reporting standards for metabolite annotation and identification in metabolomic studies

(2013) Reza M Salek et al.   GigaScience

Metabolomics of forage plants: a review

(2012) Susanne Rasmussen et al.   ANNALS OF BOTANY

Iterative Reclassification in Agglomerative Clustering

(2011) Nicholas A. Heard   JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS

Bioinformatics tools for cancer metabolomics

(2011) Grigoriy Blekherman et al.   Metabolomics

Metabolic and Phenotypic Responses of Greenhouse-Grown Maize Hybrids to Experimentally Controlled Drought Stress

(2011) Sandra Witt et al.   Molecular Plant

The Medicago genome provides insight into the evolution of rhizobial symbioses

(2011) Nevin D. Young et al.   NATURE

High-Resolution Temporal Profiling of Transcripts during Arabidopsis Leaf Senescence Reveals a Distinct Chronology of Processes and Regulation

(2011) E. Breeze et al.   PLANT CELL

Data-processing strategies for metabolomics studies

(2011) Margriet M.W.B. Hendriks et al.   TRAC-TRENDS IN ANALYTICAL CHEMISTRY

Genetic Engineering for Modern Agriculture: Challenges and Perspectives

(2010) Ron Mittler et al.   Annual Review of Plant Biology

A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series

(2010) Oliver Stegle et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Chemometrics in metabolomics—A review in human disease diagnosis

(2009) Rasmus Madsen et al.   ANALYTICA CHIMICA ACTA

Application of Fuzzy c-Means Clustering in Data Analysis of Metabolomics

(2009) Xiang Li et al.   ANALYTICAL CHEMISTRY

Temporal clustering by affinity propagation reveals transcriptional modules in Arabidopsis thaliana

(2009) S. J. Kiddle et al.   BIOINFORMATICS

A study on the susceptibility of the model legume plant Medicago truncatula to the soil-borne pathogen Fusarium oxysporum

(2009) Montserrat Ramírez-Suero et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Crosstalk between biotic and abiotic stress responses in tomato is mediated by theAIM1transcription factor

(2009) Synan AbuQamar et al.   PLANT JOURNAL

Photosynthesis under drought and salt stress: regulation mechanisms from whole plant to cell

(2008) M. M. Chaves et al.   ANNALS OF BOTANY

Responses of the pea (Pisum sativum L.) leaf metabolome to drought stress assessed by nuclear magnetic resonance spectroscopy

(2008) Adrian J. Charlton et al.   Metabolomics

Flavonoids from carnation (Dianthus caryophyllus) and their antifungal activity

(2008) Francesco Galeotti et al.   Phytochemistry Letters

Metabolomics-assisted breeding: a viable option for crop improvement?

(2008) Alisdair R. Fernie et al.   TRENDS IN GENETICS