Article
Biotechnology & Applied Microbiology
Karel Olavarria, Alexandre Carnet, Joachim van Renselaar, Caspar Quakkelaar, Ricardo Cabrera, Leonor Guedes da Silva, Aron L. Smids, Pablo Andres Villalobos, Mark C. M. van Loosdrecht, S. Aljoscha Wahl
Summary: The study demonstrates the possibility of producing PHB as a fermentation product in E. coli with higher efficiency. The importance of an acetoacetyl-CoA reductase with a preference for NADH in PHB production is highlighted through structural and kinetic analyses. The assembly of an operon combining phaCA genes with the gene encoding the NADH-preferring acetoacetyl-CoA reductase results in continuous accumulation of PHB in E. coli cells under oxygen limiting conditions, indicating opportunities for further protein/metabolic engineering strategies.
JOURNAL OF BIOTECHNOLOGY
(2021)
Article
Chemistry, Multidisciplinary
Felix Trottmann, Keishi Ishida, Mie Ishida-Ito, Hajo Kries, Michael Groll, Christian Hertweck
Summary: Bacteria of the Burkholderia pseudomallei group are a global health threat, causing infectious diseases. A conserved gene cluster in these bacteria is responsible for the synthesis of polyketides, which are critical for virulence. Researchers have discovered that an enzyme called BurG is involved in the formation of a cyclopropanol ring, providing insight into the biochemical basis of this process. This finding has important implications for the development of antivirulence strategies.
Article
Chemistry, Multidisciplinary
Xin Lin, Julia L. Kurz, Khushboo M. Patel, Shun Jie Wun, Waleed M. Hussein, Thierry Lonhienne, Nicholas P. West, Ross P. McGeary, Gerhard Schenk, Luke W. Guddat
Summary: Researchers screened a potential drug, NSC116565, targeting a new target KARI to combat drug-resistant tuberculosis, showing promising results in inhibiting Mycobacterium tuberculosis growth and validating KARI as a TB drug target.
CHEMISTRY-A EUROPEAN JOURNAL
(2021)
Article
Biochemical Research Methods
Kamil Kaminski, Jan Ludwiczak, Maciej Jasinski, Adriana Bukala, Rafal Madaj, Krzysztof Szczepaniak, Stanislaw Dunin-Horkawicz
Summary: Rossmann fold enzymes play important roles in biochemical pathways such as nucleotide and amino acid metabolism. This study used deep learning models based on the sequence and structural features of the beta alpha beta motif to predict the specificity of enzymes towards cofactors. The results showed highly accurate predictions, demonstrating the significance of this research for studying enzyme functions.
BRIEFINGS IN BIOINFORMATICS
(2022)
Article
Immunology
Nirbhay Singh, Anu Chauhan, Ram Kumar, Sudheer Kumar Singh
Summary: This study investigated the role of ketol-acid reductoisomerase in the growth and survival of Mycobacterium tuberculosis. Knockdown of this enzyme resulted in decreased survival inside macrophages and lower colony forming unit counts in infected mice. This highlights the importance of ketol-acid reductoisomerase for the virulence of M. tuberculosis.
MICROBES AND INFECTION
(2022)
Article
Spectroscopy
Pengjuan Sun, Hongxing Zhang, Yuanqiang Sun, Jing Liu
Summary: This review discusses fluorescent probes developed for monitoring NADH and NADPH levels in living cells and in vivo, which can rapidly respond to changes without interference from other biomolecules. These probes have been used to monitor cell status, cancer cells, and cell death, and are expected to inspire the development of novel fluorescent probes for NADH and NADPH detection.
SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY
(2021)
Article
Chemistry, Physical
Li-Jun Zhao, Caimei Zhang, Shixin Zhang, Jiayang Chen, Xiaoyi Lv, Huijuan Su, Xun Sun, Toru Murayama, Caixia Qi
Summary: A novel dual-core drive transfer hydrogen heterogeneous catalysts Ir@CNT@ADH was developed by immobilizing alcohol dehydrogenase ADH and NADH-regenerated catalyst Pyren-Ir1 on carbon nanotubes. The catalyst showed significantly improved catalytic efficiency and recycling performance, holding great potential for the combined application of chemical catalysts and bioenzymes.
JOURNAL OF CATALYSIS
(2023)
Article
Environmental Sciences
Tingting Li, Wenxuan Li, Xiaoli Chai, Xiaohu Dai, Boran Wu
Summary: The effects of carbon source on denitrification remain unclear. This study found that polyhydroxybutyrate (PHB) enhanced the growth of Pseudomonas stutzeri and improved nitrogen removal rate. Furthermore, PHB optimized intracellular electron allocation and promoted nitrogen metabolism.
Article
Chemistry, Physical
Bing-Yi Yang, Zhi-Neng You, Jiang-Tao Xue, Jiang Pan, Chun-Xiu Li, Jian He Xu
Summary: In this study, a new and natively NADH-dependent Rs7 beta-HSDH was identified, which showed high activity and efficiency in the conversion of chenodeoxycholic acid to UDCA. A one-pot two-step cascade process using Rs7 beta-HSDH and an NAD+-dependent 7 alpha-HSDH achieved an 80% isolated yield of UDCA with a high turnover number. The E-factor of this process was much lower than other reported processes, indicating its potential for sustainable and cleaner enzymatic production of UDCA.
MOLECULAR CATALYSIS
(2023)
Article
Multidisciplinary Sciences
Feng Gao, Guangyu Liu, Aobo Chen, Yangguang Hu, Huihui Wang, Jiangyuan Pan, Jinglei Feng, Hongwei Zhang, Yujie Wang, Yuanzeng Min, Chao Gao, Yujie Xiong
Summary: Researchers have designed a programmable artificial photosynthetic cell that combines biological and non-biological components to enhance the regeneration of key cofactors. This approach provides a more versatile platform for customizing artificial photosynthetic cells to meet various demands for CO2 conversion.
NATURE COMMUNICATIONS
(2023)
Article
Chemistry, Physical
Hengyu Li, Wenhe Zhang, Changli Che, Huibin Wang, Yutian Jia, Xiao Gao, Xian Jia, Bin Qin, Song You
Summary: This study successfully switched the cofactor preference of SDR5 from NADPH to NADH through rational engineering. The key intermediates of telotristat ethyl and crizotinib were synthesized using the Mu2 variant coupled with an FDH-catalyzed cofactor regeneration system. A co-expressed biocatalyst was developed to convert ketone 1 to the desired product (R)-2.
Article
Biochemistry & Molecular Biology
Noemi Esteras, Thomas S. Blacker, Evgeny A. Zherebtsov, Olga A. Stelmashuk, Ying Zhang, W. Christian Wigley, Michael R. Duchen, Albena T. Dinkova-Kostova, Andrey Y. Abramov
Summary: The transcription factor Nrf2 and its repressor Keap1 play a crucial role in cell stress adaptation by regulating gene expression related to cellular detoxification, antioxidant defense, and energy metabolism. This study investigated the impact of Nrf2 on glucose distribution and the connection between NADH production in energy metabolism and NADPH homeostasis using glio-neuronal cultures. The findings showed that Nrf2 activation enhances glucose uptake in neurons and astrocytes, with prioritized consumption for mitochondria-related energy production rather than NADPH synthesis in the pentose phosphate pathway.
Article
Biotechnology & Applied Microbiology
Lin-Xiang Li, Le-Yi Yu, Bin Wang, Li Pan
Summary: This study used CRISPR/Cas9 technology to overexpress NADH kinases and malic enzyme in Aspergillus niger, resulting in increased glucoamylase production. The strategy led to a significant improvement in glucoamylase activity and secretion, providing an effective approach for enhancing glucoamylase production in A. niger.
JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY
(2022)
Article
Biochemistry & Molecular Biology
Hye Yeon Cho, Mi Sun Nam, Ho Jeong Hong, Wan Seok Song, Sung-il Yoon
Summary: NAD(H)/NADP(H)-dependent aldehyde/alcohol oxidoreductase (AAOR) plays a crucial role in reducing aldehydes or oxidizing alcohols in various cellular processes. A unique AAOR, Bacillus subtilis YugJ, has been identified that specifically reduces furan aldehyde HMF in an NADPH- and Ni2+-dependent manner. The structural analyses of YugJ revealed key interactions with NADP and Ni2+, providing insights into its substrate-binding mode.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Article
Chemistry, Physical
Ningning Zhang, Beatrice Mueller, Tanja Ortoft Kirkeby, Selin Kara, Christoph Loderer
Summary: This study presents a novel NADPH regeneration method based on the natural thioredoxin electron delivery system. The TR/Trx1 system showed good catalytic activity and remarkable thermostability, making it a feasible option for the synthesis of high value chiral compounds.
Article
Multidisciplinary Sciences
Ruijie K. Zhang, Kai Chen, Xiongyi Huang, Lena Wohlschlager, Hans Renata, Frances H. Arnold
Article
Chemistry, Organic
Kai Chen, Xiongyi Huang, Shuo-Qing Zhang, Andrew Z. Zhou, S. B. Jennifer Kan, Xin Hong, Frances H. Arnold
Review
Chemistry, Multidisciplinary
Jackson K. B. Cahn, Jorn Piel
Summary: This review discusses available and emerging techniques for targeted single-cell analysis, with a particular focus on applications to the discovery and study of natural products.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
(2021)
Article
Chemistry, Multidisciplinary
Oliver F. Brandenberg, Kai Chen, Frances H. Arnold
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
(2019)
Article
Multidisciplinary Sciences
Zachary Wu, S. B. Jennifer Kan, Russell D. Lewis, Bruce J. Wittmann, Frances H. Arnold
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2019)
Article
Chemistry, Multidisciplinary
Juner Zhang, Xiongyi Huang, Ruijie K. Zhang, Frances H. Arnold
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
(2019)
Article
Biochemistry & Molecular Biology
Silke Reiter, Jackson K. B. Cahn, Vincent Wiebach, Reiko Ueoka, Joern Piel
Article
Biochemistry & Molecular Biology
Ella J. Watkins, Patrick J. Almhjell, Frances H. Arnold
Article
Chemistry, Physical
David K. Romney, Nicholas S. Sarai, Frances H. Arnold
Article
Chemistry, Physical
Oliver F. Brandenberg, David C. Miller, Ulrich Markel, Anissa Ouald Chaib, Frances H. Arnold
Article
Chemistry, Multidisciplinary
Markus Dick, Nicholas S. Sarai, Michael W. Martynowycz, Tamir Gonen, Frances H. Arnold
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
(2019)
Article
Chemistry, Multidisciplinary
Yang Yang, Inha Cho, Xiaotian Qi, Peng Liu, Frances H. Arnold
Article
Biochemical Research Methods
Claire N. Bedbrook, Kevin K. Yang, J. Elliott Robinson, Elisha D. Mackey, Viviana Gradinaru, Frances H. Arnold
Article
Chemistry, Multidisciplinary
Nathaniel W. Goldberg, Anders M. Knight, Ruijie K. Zhang, Frances H. Arnold
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
(2019)
Review
Chemistry, Physical
Kai Chen, Frances H. Arnold
Article
Biotechnology & Applied Microbiology
Nicolas Huber, Edgar Alberto Alcala-Orozco, Thomas Rexer, Udo Reichl, Steffen Klamt
Summary: Cell-free production systems are commonly used for synthesizing industrial chemicals and biopharmaceuticals. This study presents a model-based optimization framework for cell-free enzyme cascades, taking into account parameter uncertainties. The approach was exemplified using the synthesis of GDP-fucose, resulting in significant improvements in the process.
METABOLIC ENGINEERING
(2024)