Sequencing, Annotation, and Characterization of the Influenza Ferret Infectome

Interactions between Streptococcus pneumoniae and influenza virus: a mutually beneficial relationship?

(2012) Kirsty R Short et al.   Future Microbiology

Differential Pathological and Immune Responses in Newly Weaned Ferrets Are Associated with a Mild Clinical Outcome of Pandemic 2009 H1N1 Infection

(2012) S. S. H. Huang et al.   JOURNAL OF VIROLOGY

Plasticity and Virus Specificity of the Airway Epithelial Cell Immune Response during Respiratory Virus Infection

(2012) I. Ioannidis et al.   JOURNAL OF VIROLOGY

IFITM3 restricts the morbidity and mortality associated with influenza

(2012) Aaron R. Everitt et al.   NATURE

De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)

(2011) Zhangying Wang et al.   BMC GENOMICS

When the human viral infectome and diseasome networks collide: towards a systems biology platform for the aetiology of human diseases

(2011) Vincent Navratil et al.   BMC Systems Biology

The ferret as a model organism to study influenza A virus infection

(2011) J. A. Belser et al.   Disease Models & Mechanisms

Differential pulmonary transcriptomic profiles in murine lungs infected with low and highly virulent influenza H3N2 viruses reveal dysregulation of TREM1 signaling, cytokines, and chemokines

(2011) Fransiskus X. Ivan et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Comparison of a Live Attenuated 2009 H1N1 Vaccine with Seasonal Influenza Vaccines against 2009 Pandemic H1N1 Virus Infection in Mice and Ferrets

(2011) Grace L. Chen et al.   JOURNAL OF INFECTIOUS DISEASES

A Pre-Pandemic Outbreak of Triple-Reassortant Swine Influenza Virus Infection Among University Students, South Dakota, 2008

(2011) Fatimah S. Dawood et al.   JOURNAL OF INFECTIOUS DISEASES

Seasonal H1N1 Influenza Virus Infection Induces Cross-Protective Pandemic H1N1 Virus Immunity through a CD8-Independent, B Cell-Dependent Mechanism

(2011) Y. Fang et al.   JOURNAL OF VIROLOGY

Highly Pathogenic Avian Influenza (H5N1): Pathways of Exposure at the Animal‐Human Interface, a Systematic Review

(2011) Maria D. Van Kerkhove et al.   PLoS One

The Geographic Synchrony of Seasonal Influenza: A Waves across Canada and the United States

(2011) Dena L. Schanzer et al.   PLoS One

Repeated Small Perturbation Approach Reveals Transcriptomic Steady States

(2011) Ching-Lung Huang et al.   PLoS One

Comparative Analyses of Pandemic H1N1 and Seasonal H1N1, H3N2, and Influenza B Infections Depict Distinct Clinical Pictures in Ferrets

(2011) Stephen S. H. Huang et al.   PLoS One

Effects of the C-Terminal Truncation in NS1 Protein of the 2009 Pandemic H1N1 Influenza Virus on Host Gene Expression

(2011) Jiagang Tu et al.   PLoS One

Microbiota regulates immune defense against respiratory tract influenza A virus infection

(2011) T. Ichinohe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenetic Utility of Nuclear Introns in Interfamilial Relationships of Caniformia (Order Carnivora)

(2011) Li Yu et al.   SYSTEMATIC BIOLOGY

Neuropathology of H5N1 virus infection in ferrets

(2011) Bi-Hung Peng et al.   VETERINARY MICROBIOLOGY

Transcriptome sequencing and development of an expression microarray platform for the domestic ferret

(2010) Carl E Bruder et al.   BMC GENOMICS

In vivo ribavirin activity against severe pandemic H1N1 influenza A/Mexico/4108/2009

(2010) T. Rowe et al.   JOURNAL OF GENERAL VIROLOGY

CXC Chemokine Ligand (CXCL) 9 and CXCL10 Are Antagonistic Costimulation Molecules during the Priming of Alloreactive T Cell Effectors

(2010) J. M. Rosenblum et al.   JOURNAL OF IMMUNOLOGY

Incidence of 2009 pandemic influenza A H1N1 infection in England: a cross-sectional serological study

(2010) Elizabeth Miller et al.   LANCET

Modeling host responses in ferrets during A/California/07/2009 influenza infection

(2010) Thomas Rowe et al.   VIROLOGY

Early gene expression events in ferrets in response to SARS coronavirus infection versus direct interferon-alpha2b stimulation

(2010) Ali Danesh et al.   VIROLOGY

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

Cutting Edge: Contribution of Lung-Resident T Cell Proliferation to the Overall Magnitude of the Antigen-Specific CD8 T Cell Response in the Lungs following Murine Influenza Virus Infection

(2009) J. McGill et al.   JOURNAL OF IMMUNOLOGY

Host Genetic Variation Affects Resistance to Infection with a Highly Pathogenic H5N1 Influenza A Virus in Mice

(2009) A. C. M. Boon et al.   JOURNAL OF VIROLOGY

In vitro and in vivo characterization of new swine-origin H1N1 influenza viruses

(2009) Yasushi Itoh et al.   NATURE

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Emergence of a Novel Swine-Origin Influenza A (H1N1) Virus in Humans

(2009)   NEW ENGLAND JOURNAL OF MEDICINE

TNF/iNOS-producing dendritic cells are the necessary evil of lethal influenza virus infection

(2009) J. R. Aldridge et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Gene Expression Analysis of Host Innate Immune Responses during Lethal H5N1 Infection in Ferrets

(2008) C. M. Cameron et al.   JOURNAL OF VIROLOGY

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms

(2008) Peter A. C. 't Hoen et al.   NUCLEIC ACIDS RESEARCH