Transcriptome dynamics of developing maize leaves and genomewide prediction ofciselements and their cognate transcription factors

Maize and millet transcription factors annotated using comparative genomic and transcriptomic data

(2014) Jinn-Jy Lin et al.   BMC GENOMICS

Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity

(2014) Matthew T. Weirauch et al.   CELL

Cracking the Kranz enigma with systems biology

(2014) J. P. Fouracre et al.   JOURNAL OF EXPERIMENTAL BOTANY

Comparative analyses of C4 and C3 photosynthesis in developing leaves of maize and rice

(2014) Lin Wang et al.   NATURE BIOTECHNOLOGY

A Functional and Evolutionary Perspective on Transcription Factor Binding in Arabidopsis thaliana

(2014) K. S. Heyndrickx et al.   PLANT CELL

SCARECROW, SCR-LIKE 23 and SHORT-ROOT control bundle sheath cell fate and function inArabidopsis thaliana

(2014) Hongchang Cui et al.   PLANT JOURNAL

Dynamic Transcriptome Landscape of Maize Embryo and Endosperm Development

(2014) Jian Chen et al.   PLANT PHYSIOLOGY

Possible roles of basic helix-loop-helix transcription factors in adaptation to drought

(2014) Graciela Castilhos et al.   PLANT SCIENCE

DNA-binding specificities of plant transcription factors and their potential to define target genes

(2014) José M. Franco-Zorrilla et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Contribution of NAC Transcription Factors to Plant Adaptation to Land

(2014) B. Xu et al.   SCIENCE

Auxin-associated initiation of vascular cell differentiation by LONESOME HIGHWAY

(2013) K. Ohashi-Ito et al.   DEVELOPMENT

Genome-Wide Identification and Evolutionary and Expression Analyses of MYB-Related Genes in Land Plants

(2013) H. Du et al.   DNA RESEARCH

JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles

(2013) Anthony Mathelier et al.   NUCLEIC ACIDS RESEARCH

Cell-to-Cell Movement of Two Interacting AT-Hook Factors inArabidopsisRoot Vascular Tissue Patterning

(2013) Jing Zhou et al.   PLANT CELL

BLH1 and KNAT3 modulate ABA responses during germination and early seedling development in Arabidopsis

(2013) Dachan Kim et al.   PLANT JOURNAL

Genome-wide transcript analysis of early maize leaf development reveals gene cohorts associated with the differentiation of C4Kranz anatomy

(2013) Peng Wang et al.   PLANT JOURNAL

The BIG gene is required for auxin-mediated organ growth in Arabidopsis

(2013) Xiaola Guo et al.   PLANTA

Anatomical and transcriptional dynamics of maize embryonic leaves during seed germination

(2013) W.-Y. Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural and functional heterogeneity in phloem loading and transport

(2013) Thomas L. Slewinski et al.   Frontiers in Plant Science

Functional Evolution in the Plant SQUAMOSA-PROMOTER BINDING PROTEIN-LIKE (SPL) Gene Family

(2013) Jill C. Preston et al.   Frontiers in Plant Science

Genome-Wide Analysis of Syntenic Gene Deletion in the Grasses

(2012) James C. Schnable et al.   Genome Biology and Evolution

Scarecrow Plays a Role in Establishing Kranz Anatomy in Maize Leaves

(2012) Thomas L. Slewinski et al.   PLANT AND CELL PHYSIOLOGY

Characterizing Regulatory and Functional Differentiation between Maize Mesophyll and Bundle Sheath Cells by Transcriptomic Analysis

(2012) Y.-M. Chang et al.   PLANT PHYSIOLOGY

The plant heat stress transcription factor (Hsf) family: Structure, function and evolution

(2011) Klaus-Dieter Scharf et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

First off the mark: early seed germination

(2011) Karin Weitbrecht et al.   JOURNAL OF EXPERIMENTAL BOTANY

The spatial distribution of cis regulatory elements in yeast promoters and its implications for transcriptional regulation

(2010) Zhenguo Lin et al.   BMC GENOMICS

Plant development: A TALE story

(2010) Olivier Hamant et al.   COMPTES RENDUS BIOLOGIES

Transcriptional regulation of vascular cell fates

(2010) Kyoko Ohashi-Ito et al.   CURRENT OPINION IN PLANT BIOLOGY

Genome-wide Dissection of MicroRNA Functions and Cotargeting Networks Using Gene Set Signatures

(2010) John S. Tsang et al.   MOLECULAR CELL

The developmental dynamics of the maize leaf transcriptome

(2010) Pinghua Li et al.   NATURE GENETICS

PSEUDO-RESPONSE REGULATORS 9, 7, and 5 Are Transcriptional Repressors in the Arabidopsis Circadian Clock

(2010) N. Nakamichi et al.   PLANT CELL

MYB transcription factors in Arabidopsis

(2010) Christian Dubos et al.   TRENDS IN PLANT SCIENCE

Arabidopsis SBP-Box Genes SPL10, SPL11 and SPL2 Control Morphological Change in Association with Shoot Maturation in the Reproductive Phase

(2009) Masahito Shikata et al.   PLANT AND CELL PHYSIOLOGY

TCP genes: a family snapshot ten years later

(2009) Mar Martín-Trillo et al.   TRENDS IN PLANT SCIENCE

Integration of Light and Auxin Signaling

(2009) K. J. Halliday et al.   Cold Spring Harbor Perspectives in Biology

Microdissection of Shoot Meristem Functional Domains

(2009) Lionel Brooks et al.   PLoS Genetics

The WUS homeobox-containing (WOX) protein family

(2009) Eric van der Graaff et al.   GENOME BIOLOGY

The Common Function of a Novel Subfamily of B-Box Zinc Finger Proteins with Reference to Circadian-Associated Events inArabidopsis thaliana

(2008) Takeshi KUMAGAI et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice

(2008) Dong Wang et al.   BMC GENOMICS

The Expression Level of the Chromatin-Associated HMGB1 Protein Influences Growth, Stress Tolerance, and Transcriptome in Arabidopsis

(2008) Dorte Launholt Lildballe et al.   JOURNAL OF MOLECULAR BIOLOGY

Vein patterning screens and the defectively organized tributaries mutants in Arabidopsis thaliana

(2008) Jalean Joyanne Petricka et al.   PLANT JOURNAL

The Role of bZIP Transcription Factors in Green Plant Evolution: Adaptive Features Emerging from Four Founder Genes

(2008) Luiz Gustavo Guedes Corrêa et al.   PLoS One

The plant B3 superfamily

(2008) K SWAMINATHAN et al.   TRENDS IN PLANT SCIENCE