Library preparation methodology can influence genomic and functional predictions in human microbiome research

The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies

(2015) J Paul Brooks et al.   BMC MICROBIOLOGY

The gut microbiota of nonalcoholic fatty liver disease: current methods and their interpretation

(2015) Niels van Best et al.   Hepatology International

Sequencing and beyond: integrating molecular 'omics' for microbial community profiling

(2015) Eric A. Franzosa et al.   NATURE REVIEWS MICROBIOLOGY

New Perspectives on Microbial Community Distortion after Whole-Genome Amplification

(2015) Alexander J. Probst et al.   PLoS One

Evaluating variation in human gut microbiota profiles due to DNA extraction method and inter-subject differences

(2015) Brett Wagner Mackenzie et al.   Frontiers in Microbiology

MUSiCC: a marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome

(2015) Ohad Manor et al.   GENOME BIOLOGY

Average genome size estimation improves comparative metagenomics and sheds light on the functional ecology of the human microbiome

(2015) Stephen Nayfach et al.   GENOME BIOLOGY

Limits to robustness and reproducibility in the demarcation of operational taxonomic units

(2014) Thomas S. B. Schmidt et al.   ENVIRONMENTAL MICROBIOLOGY

Variations in 16S rRNA-based microbiome profiling between pyrosequencing runs and between pyrosequencing facilities

(2014) Minseok Kim et al.   JOURNAL OF MICROBIOLOGY

A Taxonomic Signature of Obesity in the Microbiome? Getting to the Guts of the Matter

(2014) Mariel M. Finucane et al.   PLoS One

Relating the metatranscriptome and metagenome of the human gut

(2014) E. A. Franzosa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

All hail reproducibility in microbiome research

(2014) Jacques Ravel et al.   Microbiome

Assessment of the human faecal microbiota: II. Reproducibility and associations of 16S rRNA pyrosequences

(2012) Roberto Flores et al.   EUROPEAN JOURNAL OF CLINICAL INVESTIGATION

A framework for human microbiome research

(2012)   NATURE

PCR Amplification-Independent Methods for Detection of Microbial Communities by the High-Density Microarray PhyloChip

(2011) Kristen M. DeAngelis et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Accurate Genome Relative Abundance Estimation Based on Shotgun Metagenomic Reads

(2011) Li C. Xia et al.   PLoS One

An improved empirical bayes approach to estimating differential gene expression in microarray time-course data: BETR (Bayesian Estimation of Temporal Regulation)

(2009) Martin J Aryee et al.   BMC BIOINFORMATICS