New Perspectives on Microbial Community Distortion after Whole-Genome Amplification

Coupling Genetic and Chemical Microbiome Profiling Reveals Heterogeneity of Archaeome and Bacteriome in Subsurface Biofilms That Are Dominated by the Same Archaeal Species

(2014) Alexander J. Probst et al.   PLoS One

Biology of a widespread uncultivated archaeon that contributes to carbon fixation in the subsurface

(2014) Alexander J. Probst et al.   Nature Communications

Functional microbial diversity explains groundwater chemistry in a pristine aquifer

(2013) Theodore M Flynn et al.   BMC MICROBIOLOGY

Systematic evaluation of bias in microbial community profiles induced by whole genome amplification

(2013) Susana O. L. Direito et al.   ENVIRONMENTAL MICROBIOLOGY

Establishment and early succession of bacterial communities in monochloramine-treated drinking water biofilms

(2013) Randy P. Revetta et al.   FEMS MICROBIOLOGY ECOLOGY

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

Archaea on Human Skin

(2013) Alexander J. Probst et al.   PLoS One

Genomes from Metagenomics

(2013) I. Sharon et al.   SCIENCE

Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment

(2013) Cindy J. Castelle et al.   Nature Communications

New perspectives on viable microbial communities in low-biomass cleanroom environments

(2012) Parag Vaishampayan et al.   ISME Journal

Global distribution of microbial abundance and biomass in subseafloor sediment

(2012) J. Kallmeyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fermentation, Hydrogen, and Sulfur Metabolism in Multiple Uncultivated Bacterial Phyla

(2012) K. C. Wrighton et al.   SCIENCE

Comparison of Innovative Molecular Approaches and Standard Spore Assays for Assessment of Surface Cleanliness

(2011) Moogega Cooper et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers

(2011) William A. Walters et al.   BIOINFORMATICS

Reproducibility and quantitation of amplicon sequencing-based detection

(2011) Jizhong Zhou et al.   ISME Journal

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

(2011) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Diversity of Anaerobic Microbes in Spacecraft Assembly Clean Rooms

(2010) A. Probst et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Multiple displacement amplification compromises quantitative analysis of metagenomes

(2010) Suzan Yilmaz et al.   NATURE METHODS

Deep-Sea Oil Plume Enriches Indigenous Oil-Degrading Bacteria

(2010) Terry C. Hazen et al.   SCIENCE

Comprehensive Census of Bacteria in Clean Rooms by Using DNA Microarray and Cloning Methods

(2009) M. T. La Duc et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Something from (almost) nothing: the impact of multiple displacement amplification on microbial ecology

(2008) Erik K Binga et al.   ISME Journal

The Pangenome Structure of Escherichia coli: Comparative Genomic Analysis of E. coli Commensal and Pathogenic Isolates

(2008) D. A. Rasko et al.   JOURNAL OF BACTERIOLOGY