Ribosome recycling induces optimal translation rate at low ribosomal availability

Ribosome flow model with positive feedback

(2013) M. Margaliot et al.   Journal of the Royal Society Interface

Two-step model of stop codon recognition by eukaryotic release factor eRF1

(2013) Polina Kryuchkova et al.   NUCLEIC ACIDS RESEARCH

Ribosome Traffic on mRNAs Maps to Gene Ontology: Genome-wide Quantification of Translation Initiation Rates and Polysome Size Regulation

(2013) Luca Ciandrini et al.   PLoS Computational Biology

Translation Initiation Factors eIF3 and HCR1 Control Translation Termination and Stop Codon Read-Through in Yeast Cells

(2013) Petra Beznosková et al.   PLoS Genetics

Structural view on recycling of archaeal and eukaryotic ribosomes after canonical termination and ribosome rescue

(2012) Sibylle Franckenberg et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

A yeast tRNA mutant that causes pseudohyphal growth exhibits reduced rates of CAG codon translation

(2012) Alain J. Kemp et al.   MOLECULAR MICROBIOLOGY

Structural basis of highly conserved ribosome recycling in eukaryotes and archaea

(2012) Thomas Becker et al.   NATURE

Determinants of Translation Elongation Speed and Ribosomal Profiling Biases in Mouse Embryonic Stem Cells

(2012) Alexandra Dana et al.   PLoS Computational Biology

Modeling Translation in Protein Synthesis with TASEP: A Tutorial and Recent Developments

(2011) R. K. P. Zia et al.   JOURNAL OF STATISTICAL PHYSICS

Stochastic theory of protein synthesis and polysome: Ribosome profile on a single mRNA transcript

(2011) Ajeet K. Sharma et al.   JOURNAL OF THEORETICAL BIOLOGY

Totally Asymmetric Simple Exclusion Process on Networks

(2011) Izaak Neri et al.   PHYSICAL REVIEW LETTERS

Kinetic analysis reveals the ordered coupling of translation termination and ribosome recycling in yeast

(2011) C. J. Shoemaker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ribosome recycling depends on a mechanistic link between the FeS cluster domain and a conformational switch of the twin-ATPase ABCE1

(2011) D. Barthelme et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Non-equilibrium statistical mechanics: from a paradigmatic model to biological transport

(2011) T Chou et al.   REPORTS ON PROGRESS IN PHYSICS

Wobble base-pairing slows in vivo translation elongation in metazoans

(2011) M. Stadler et al.   RNA

The Dynamics of Supply and Demand in mRNA Translation

(2011) Chris A. Brackley et al.   PLoS Computational Biology

An Evolutionarily Conserved Mechanism for Controlling the Efficiency of Protein Translation

(2010) Tamir Tuller et al.   CELL

The Role of ABCE1 in Eukaryotic Posttermination Ribosomal Recycling

(2010) Andrey V. Pisarev et al.   MOLECULAR CELL

Role of the particle’s stepping cycle in an asymmetric exclusion process: A model of mRNA translation

(2010) L. Ciandrini et al.   PHYSICAL REVIEW E

Queueing Phase Transition: Theory of Translation

(2009) M. Carmen Romano et al.   PHYSICAL REVIEW LETTERS

Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling

(2009) N. T. Ingolia et al.   SCIENCE

Translation factors promote the formation of two states of the closed-loop mRNP

(2008) Nadia Amrani et al.   NATURE

Heterologous Protein Expression Is Enhanced by Harmonizing the Codon Usage Frequencies of the Target Gene with those of the Expression Host

(2008) Evelina Angov et al.   PLoS One

The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing

(2008) U. Nagalakshmi et al.   SCIENCE