Ribosome Traffic on mRNAs Maps to Gene Ontology: Genome-wide Quantification of Translation Initiation Rates and Polysome Size Regulation

Genes adopt non-optimal codon usage to generate cell cycle-dependent oscillations in protein levels

(2012) Milana Frenkel-Morgenstern et al.   Molecular Systems Biology

MATHEMATICAL AND COMPUTATIONAL MODELLING OF RIBOSOMAL MOVEMENT AND PROTEIN SYNTHESIS: AN OVERVIEW

(2012) Tobias von der Haar   Computational and Structural Biotechnology Journal

Stochastic theory of protein synthesis and polysome: Ribosome profile on a single mRNA transcript

(2011) Ajeet K. Sharma et al.   JOURNAL OF THEORETICAL BIOLOGY

Glucose depletion inhibits translation initiation via eIF4A loss and subsequent 48S preinitiation complex accumulation, while the pentose phosphate pathway is coordinately up-regulated

(2011) Lydia M. Castelli et al.   MOLECULAR BIOLOGY OF THE CELL

Determinants of translation efficiency and accuracy

(2011) H. Gingold et al.   Molecular Systems Biology

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

Non-equilibrium statistical mechanics: from a paradigmatic model to biological transport

(2011) T Chou et al.   REPORTS ON PROGRESS IN PHYSICS

Genome-Scale Analysis of Translation Elongation with a Ribosome Flow Model

(2011) Shlomi Reuveni et al.   PLoS Computational Biology

The Dynamics of Supply and Demand in mRNA Translation

(2011) Chris A. Brackley et al.   PLoS Computational Biology

Comparative Analysis of Proteome and Transcriptome Variation in Mouse

(2011) Anatole Ghazalpour et al.   PLoS Genetics

An Evolutionarily Conserved Mechanism for Controlling the Efficiency of Protein Translation

(2010) Tamir Tuller et al.   CELL

Role of the particle’s stepping cycle in an asymmetric exclusion process: A model of mRNA translation

(2010) L. Ciandrini et al.   PHYSICAL REVIEW E

Translation efficiency is determined by both codon bias and folding energy

(2010) Tamir Tuller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Comprehensive, Quantitative, and Genome-Wide Model of Translation

(2010) Marlena Siwiak et al.   PLoS Computational Biology

Stochastic kinetics of ribosomes: Single motor properties and collective behavior

(2009) Ashok Garai et al.   PHYSICAL REVIEW E

Queueing Phase Transition: Theory of Translation

(2009) M. Carmen Romano et al.   PHYSICAL REVIEW LETTERS

Coding-Sequence Determinants of Gene Expression in Escherichia coli

(2009) G. Kudla et al.   SCIENCE

Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling

(2009) N. T. Ingolia et al.   SCIENCE

Ribosome Collisions and Translation Efficiency: Optimization by Codon Usage and mRNA Destabilization

(2008) Namiko Mitarai et al.   JOURNAL OF MOLECULAR BIOLOGY

Following translation by single ribosomes one codon at a time

(2008) Jin-Der Wen et al.   NATURE