Inferring pandemic growth rates from sequence data

Rates of coalescence for common epidemiological models at equilibrium

(2011) K. Koelle et al.   Journal of the Royal Society Interface

Estimating the Basic Reproductive Number from Viral Sequence Data

(2011) Tanja Stadler et al.   MOLECULAR BIOLOGY AND EVOLUTION

Skyline-plot methods for estimating demographic history from nucleotide sequences

(2011) SIMON Y. W. HO et al.   Molecular Ecology Resources

Protocols for sampling viral sequences to study epidemic dynamics

(2010) J. C. Stack et al.   Journal of the Royal Society Interface

Phylodynamics of HIV-1 Circulating Recombinant Forms 12_BF and 38_BF in Argentina and Uruguay

(2010) Gonzalo Bello et al.   Retrovirology

Spatial phylodynamics of HIV-1 epidemic emergence in east Africa

(2009) Rebecca R Gray et al.   AIDS

Household Transmission of 2009 Pandemic Influenza A (H1N1) Virus in the United States

(2009) Simon Cauchemez et al.   NEW ENGLAND JOURNAL OF MEDICINE

Pandemic Potential of a Strain of Influenza A (H1N1): Early Findings

(2009) C. Fraser et al.   SCIENCE

The Global Spread of Hepatitis C Virus 1a and 1b: A Phylodynamic and Phylogeographic Analysis

(2009) Gkikas Magiorkinis et al.   PLOS MEDICINE

Spatio-Temporal Tracking and Phylodynamics of an Urban Dengue 3 Outbreak in São Paulo, Brazil

(2009) Adriano Mondini et al.   PLoS Neglected Tropical Diseases

Smooth Skyride through a Rough Skyline: Bayesian Coalescent-Based Inference of Population Dynamics

(2008) V. N. Minin et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genomic and epidemiological dynamics of human influenza A virus

(2008) Andrew Rambaut et al.   NATURE

Mathematical models of infectious disease transmission

(2008) Nicholas C. Grassly et al.   NATURE REVIEWS MICROBIOLOGY