Two forward genetic screens for vein density mutants in sorghum converge on a cytochrome P450 gene in the brassinosteroid pathway

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Shortening the Breeding Cycle of Sorghum, a Model Crop for Research

(2014) Govinda Rizal et al.   CROP SCIENCE

Cracking the Kranz enigma with systems biology

(2014) J. P. Fouracre et al.   JOURNAL OF EXPERIMENTAL BOTANY

Short-Root1 Plays a Role in the Development of Vascular Tissue and Kranz Anatomy in Maize Leaves

(2014) Thomas L. Slewinski et al.   Molecular Plant

Genome-Wide Study of KNOX Regulatory Network Reveals Brassinosteroid Catabolic Genes Important for Shoot Meristem Function in Rice

(2014) K. Tsuda et al.   PLANT CELL

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

A comprehensive genetic study reveals a crucial role ofCYP90D2/D2in regulating plant architecture in rice (Oryza sativa)

(2013) Hui Li et al.   NEW PHYTOLOGIST

Genome-wide transcript analysis of early maize leaf development reveals gene cohorts associated with the differentiation of C4Kranz anatomy

(2013) Peng Wang et al.   PLANT JOURNAL

MergeAlign: improving multiple sequence alignment performance by dynamic reconstruction of consensus multiple sequence alignments

(2012) Peter W Collingridge et al.   BMC BIOINFORMATICS

Genome sequencing reveals agronomically important loci in rice using MutMap

(2012) Akira Abe et al.   NATURE BIOTECHNOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Brassinosteroid production and signaling differentially control cell division and expansion in the leaf

(2012) Miroslava K. Zhiponova et al.   NEW PHYTOLOGIST

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Scarecrow Plays a Role in Establishing Kranz Anatomy in Maize Leaves

(2012) Thomas L. Slewinski et al.   PLANT AND CELL PHYSIOLOGY

Rice CYP90D2 and CYP90D3 catalyze C-23 hydroxylation of brassinosteroids in vitro

(2012) Tomoaki Sakamoto et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

The C4 plant lineages of planet Earth

(2011) R. F. Sage et al.   JOURNAL OF EXPERIMENTAL BOTANY

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Functional Analysis of Corn Husk Photosynthesis

(2011) J. J. L. Pengelly et al.   PLANT PHYSIOLOGY

Molecular phylogenies disprove a hypothesized C4 reversion in Eragrostis walteri (Poaceae)

(2010) Amanda L. Ingram et al.   ANNALS OF BOTANY

Involvement of brassinosteroid signals in the floral-induction network of Arabidopsis

(2010) J. Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

Archaeal phylogenomics provides evidence in support of a methanogenic origin of the Archaea and a thaumarchaeal origin for the eukaryotes

(2010) S. Kelly et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Brassinosteroid signaling and auxin transport are required to establish the periodic pattern of Arabidopsis shoot vascular bundles

(2009) M. Ibanes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA