Methylotrophs in natural habitats: current insights through metagenomics

Multiphyletic origins of methylotrophy in A lphaproteobacteria , exemplified by comparative genomics of Lake Washington isolates

(2015) David A. C. Beck et al.   ENVIRONMENTAL MICROBIOLOGY

Global dispersion and local diversification of the methane seep microbiome

(2015) S. Emil Ruff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-Throughput Metagenomic Technologies for Complex Microbial Community Analysis: Open and Closed Formats

(2015) Jizhong Zhou et al.   mBio

Oxygen availability is a major factor in determining the composition of microbial communities involved in methane oxidation

(2015) Maria E. Hernandez et al.   PeerJ

Autotrophic Carbon Dioxide Fixation via the Calvin-Benson-Bassham Cycle by the Denitrifying Methanotroph “Candidatus Methylomirabilis oxyfera”

(2014) Olivia Rasigraf et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metatranscriptomic Analysis of Arctic Peat Soil Microbiota

(2014) Alexander T. Tveit et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Distribution and diversity ofVerrucomicrobiamethanotrophs in geothermal and acidic environments

(2014) Christine E. Sharp et al.   ENVIRONMENTAL MICROBIOLOGY

Trimethylamine and trimethylamine N-oxide are supplementary energy sources for a marine heterotrophic bacterium: implications for marine carbon and nitrogen cycling

(2014) Ian DEA Lidbury et al.   ISME Journal

Methane-fed microbial microcosms show differential community dynamics and pinpoint taxa involved in communal response

(2014) Igor Y Oshkin et al.   ISME Journal

Bacterial metabolism of methylated amines and identification of novel methylotrophs in Movile Cave

(2014) Daniela Wischer et al.   ISME Journal

Metaproteomic analysis of a winter to spring succession in coastal northwest Atlantic Ocean microbial plankton

(2014) Anna A Georges et al.   ISME Journal

Micro-aerobic bacterial methane oxidation in the chemocline and anoxic water column of deep south-Alpine Lake Lugano (Switzerland)

(2014) Jan Blees et al.   LIMNOLOGY AND OCEANOGRAPHY

The rise and fall of methanotrophy following a deepwater oil-well blowout

(2014) M. Crespo-Medina et al.   Nature Geoscience

The Expanded Diversity of Methylophilaceae from Lake Washington through Cultivation and Genomic Sequencing of Novel Ecotypes

(2014) David A. C. Beck et al.   PLoS One

Tackling soil diversity with the assembly of large, complex metagenomes

(2014) Adina Chuang Howe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Trimethylamine N-oxide metabolism by abundant marine heterotrophic bacteria

(2014) I. Lidbury et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Anaerobic methane oxidation coupled to denitrification is the dominant methane sink in a deep lake

(2014) Joerg S. Deutzmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Detecting Nitrous Oxide Reductase (nosZ) Genes in Soil Metagenomes: Method Development and Implications for the Nitrogen Cycle

(2014) L. H. Orellana et al.   mBio

Community structure of planktonic methane-oxidizing bacteria in a subtropical reservoir characterized by dominance of phylotype closely related to nitrite reducer

(2014) Hisaya Kojima et al.   Scientific Reports

Archaea in Biogeochemical Cycles

(2013) Pierre Offre et al.   Annual Review of Microbiology

Dry/Wet Cycles Change the Activity and Population Dynamics of Methanotrophs in Rice Field Soil

(2013) K. Ma et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Rare earth metals are essential for methanotrophic life in volcanic mudpots

(2013) Arjan Pol et al.   ENVIRONMENTAL MICROBIOLOGY

Transcriptional response of bathypelagic marine bacterioplankton to the Deepwater Horizon oil spill

(2013) Adam R Rivers et al.   ISME Journal

Insights into Denitrification in Methylotenera mobilis from Denitrification Pathway and Methanol Metabolism Mutants

(2013) I. Mustakhimov et al.   JOURNAL OF BACTERIOLOGY

Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage

(2013) Mohamed F. Haroon et al.   NATURE

The Methanol Dehydrogenase Gene, mxaF, as a Functional and Phylogenetic Marker for Proteobacterial Methanotrophs in Natural Environments

(2013) Evan Lau et al.   PLoS One

Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment

(2013) Cindy J. Castelle et al.   Nature Communications

Highly efficient methane biocatalysis revealed in a methanotrophic bacterium

(2013) M. G. Kalyuzhnaya et al.   Nature Communications

A metagenomic insight into freshwater methane-utilizing communities and evidence for cooperation between theMethylococcaceaeand theMethylophilaceae

(2013) David A.C. Beck et al.   PeerJ

Effect of oxygen on the anaerobic methanotroph ‘Candidatus Methylomirabilis oxyfera’: kinetic and transcriptional analysis

(2012) Francisca A. Luesken et al.   ENVIRONMENTAL MICROBIOLOGY

Review of Methane Mitigation Technologies with Application to Rapid Release of Methane from the Arctic

(2012) Joshuah K. Stolaroff et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Organic carbon transformations in high-Arctic peat soils: key functions and microorganisms

(2012) Alexander Tveit et al.   ISME Journal

One millimetre makes the difference: high-resolution analysis of methane-oxidizing bacteria and their specific activity at the oxic–anoxic interface in a flooded paddy soil

(2012) Andreas Reim et al.   ISME Journal

A metaproteomic assessment of winter and summer bacterioplankton from Antarctic Peninsula coastal surface waters

(2012) Timothy J Williams et al.   ISME Journal

Complete Genome Sequences of Six Strains of the Genus Methylobacterium

(2012) C. J. Marx et al.   JOURNAL OF BACTERIOLOGY

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Zero-valent sulphur is a key intermediate in marine methane oxidation

(2012) Jana Milucka et al.   NATURE

A Catalytic Role of XoxF1 as La3+-Dependent Methanol Dehydrogenase in Methylobacterium extorquens Strain AM1

(2012) Tomoyuki Nakagawa et al.   PLoS One

Methanotrophic communities of Saanich Inlet: A microcosm perspective

(2012) Linda M. Sauter et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Genome sequence of strain HIMB624, a cultured representative from the OM43 clade of marine Betaproteobacteria

(2012) Megan J. Huggett et al.   Standards in Genomic Sciences

Methylotrophy in a Lake: from Metagenomics to Single-Organism Physiology

(2011) Ludmila Chistoserdova   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Functional Metagenomics: Recent Advances and Future Challenges

(2011) Ludmila Chistoserdova   Biotechnology & Genetic Engineering Reviews

Modularity of methylotrophy, revisited

(2011) Ludmila Chistoserdova   ENVIRONMENTAL MICROBIOLOGY

Synergistic metabolism of a broad range of C1 compounds in the marine methylotrophic bacterium HTCC2181

(2011) Kimberly H. Halsey et al.   ENVIRONMENTAL MICROBIOLOGY

Identification of microbial communities involved in the methane cycle of a freshwater meromictic lake

(2011) Corinne Biderre-Petit et al.   FEMS MICROBIOLOGY ECOLOGY

Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

(2011) Claudia Knief et al.   ISME Journal

Genome Sequence of the Arctic Methanotroph Methylobacter tundripaludum SV96

(2011) Mette M. Svenning et al.   JOURNAL OF BACTERIOLOGY

Genomes of Three Methylotrophs from a Single Niche Reveal the Genetic and Metabolic Divergence of the Methylophilaceae

(2011) A. Lapidus et al.   JOURNAL OF BACTERIOLOGY

Genome Sequence of Methyloversatilis universalisFAM5T, a Methylotrophic Representative of the Order Rhodocyclales

(2011) W. Kittichotirat et al.   JOURNAL OF BACTERIOLOGY

Molecular structure of La3+-induced methanol dehydrogenase-like protein in Methylobacterium radiotolerans

(2011) Yoshihisa Hibi et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Molecular structure and gene analysis of Ce3+-induced methanol dehydrogenase of Bradyrhizobium sp. MAFF211645

(2011) Nanung Agus Fitriyanto et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw

(2011) Rachel Mackelprang et al.   NATURE

The case against climate regulation via oceanic phytoplankton sulphur emissions

(2011) P. K. Quinn et al.   NATURE

Structure of a methyl-coenzyme M reductase from Black Sea mats that oxidize methane anaerobically

(2011) Seigo Shima et al.   NATURE

One Carbon Metabolism in SAR11 Pelagic Marine Bacteria

(2011) Jing Sun et al.   PLoS One

Bacterial flavin-containing monooxygenase is trimethylamine monooxygenase

(2011) Y. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dichloromethane-degrading bacteria in the genomic age

(2011) Emilie E.L. Muller et al.   RESEARCH IN MICROBIOLOGY

A Persistent Oxygen Anomaly Reveals the Fate of Spilled Methane in the Deep Gulf of Mexico

(2011) J. D. Kessler et al.   SCIENCE

The active methanotrophic community in a wetland from the High Arctic

(2011) Christiane Graef et al.   Environmental Microbiology Reports

Bacterial Catabolism of Dimethylsulfoniopropionate (DMSP)

(2011) Chris R. Reisch et al.   Frontiers in Microbiology

How half a century of research was required to understand bacterial growth on C1 and C2 compounds; the story of the serine cycle and the ethylmalonyl-CoA pathway

(2011) Christopher Anthony   SCIENCE PROGRESS

Stable Isotope Probing Analysis of the Diversity and Activity of Methanotrophic Bacteria in Soils from the Canadian High Arctic

(2010) C. Martineau et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

 -Glutamylmethylamide Is an Essential Intermediate in the Metabolism of Methylamine by Methylocella silvestris

(2010) Y. Chen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Recent progress and new challenges in metagenomics for biotechnology

(2010) Ludmila Chistoserdova   BIOTECHNOLOGY LETTERS

Environmental proteomics of microbial plankton in a highly productive coastal upwelling system

(2010) Sarah M Sowell et al.   ISME Journal

Active methylotrophs in the sediments of Lonar Lake, a saline and alkaline ecosystem formed by meteor impact

(2010) Chakkiath Paul Antony et al.   ISME Journal

The functional potential of high Arctic permafrost revealed by metagenomic sequencing, qPCR and microarray analyses

(2010) Etienne Yergeau et al.   ISME Journal

The key nickel enzyme of methanogenesis catalyses the anaerobic oxidation of methane

(2010) Silvan Scheller et al.   NATURE

Nitrite-driven anaerobic methane oxidation by oxygenic bacteria

(2010) Katharina F. Ettwig et al.   NATURE

Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea

(2010) J. McCarren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Anaerobic Oxidation of Methane: Progress with an Unknown Process

(2009) Katrin Knittel et al.   Annual Review of Microbiology

The Expanding World of Methylotrophic Metabolism

(2009) Ludmila Chistoserdova et al.   Annual Review of Microbiology

Genetics of the glutamate-mediated methylamine utilization pathway in the facultative methylotrophic beta-proteobacteriumMethyloversatilis universalisFAM5

(2009) Ekaterina Latypova et al.   MOLECULAR MICROBIOLOGY

Community proteogenomics reveals insights into the physiology of phyllosphere bacteria

(2009) N. Delmotte et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Manganese- and Iron-Dependent Marine Methane Oxidation

(2009) E. J. Beal et al.   SCIENCE

The global methane cycle: recent advances in understanding the microbial processes involved

(2009) Ralf Conrad   Environmental Microbiology Reports

The small genome of an abundant coastal ocean methylotroph

(2008) Stephen J. Giovannoni et al.   ENVIRONMENTAL MICROBIOLOGY

Marine methylotrophs revealed by stable-isotope probing, multiple displacement amplification and metagenomics

(2008) Josh D. Neufeld et al.   ENVIRONMENTAL MICROBIOLOGY

Classification of halo(alkali)philic and halo(alkali)tolerant methanotrophs provisionally assigned to the genera Methylomicrobium and Methylobacter and emended description of the genus Methylomicrobium

(2008) M. G. Kalyuzhnaya et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

High-resolution metagenomics targets specific functional types in complex microbial communities

(2008) Marina G Kalyuzhnaya et al.   NATURE BIOTECHNOLOGY