4.7 Article

Regulation of the VHL/HIF-1 Pathway by DJ-1

期刊

JOURNAL OF NEUROSCIENCE
卷 34, 期 23, 页码 8043-8050

出版社

SOC NEUROSCIENCE
DOI: 10.1523/JNEUROSCI.1244-13.2014

关键词

DJ-1; oxidative stress; Parkinson's disease

资金

  1. Canadian Institutes of Health Research, Heart and Stroke Foundation of Ontario
  2. Parkinson's Society Canada
  3. Parkinson's Research Consortium
  4. Neuroscience Canada/Krembil Foundation
  5. Centre for Stroke Recovery
  6. World Class University program through the National Research Foundation of Korea
  7. Ministry of Education, Science and Technology, South Korea [R31-2008-000-20004-0]

向作者/读者索取更多资源

DJ-1 (PARK7) is a gene linked to autosomal recessive Parkinson disease (PD). We showed previously that DJ-1 loss sensitizes neurons in models of PD and stroke. However, the biochemical mechanisms underlying this protective role are not completely clear. Here, we identify Von Hippel Lindau (VHL) protein as a critical DJ-1-interacting protein. We provide evidence that DJ-1 negatively regulates VHL ubiquitination activity of the alpha-subunit of hypoxia-inducible factor-1 (HIF-1 alpha) by inhibiting HIF-VHL interaction. Consistent with this observation, DJ-1 deficiency leads to lowered HIF-1 alpha levels in models of both hypoxia and oxidative stress, two stresses known to stabilize HIF-1 alpha. We also demonstrate that HIF-1 alpha accumulation rescues DJ-1-deficient neurons against 1-methyl-4-phenylpyridinium-induced toxicity. Interestingly, lymphoblast cells extracted from DJ-1-related PD patients show impaired HIF-1 alpha stabilization when compared with normal individuals, indicating that the DJ-1-VHL link may also be relevant to a human context. Together, our findings delineate a model by which DJ-1 mediates neuronal survival by regulation of the VHL-HIF-1 alpha pathway.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.7
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Cell Biology

Identification of novel lipid droplet factors that regulate lipophagy and cholesterol efflux in macrophage foam cells

Sabrina Robichaud, Garrett Fairman, Viyashini Vijithakumar, Esther Mak, David P. Cook, Alexander R. Pelletier, Sylvain Huard, Barbara C. Vanderhyden, Daniel Figeys, Mathieu Lavallee-Adam, Kristin Baetz, Mireille Ouimet

Summary: The study identified multiple lipid droplet-associated proteins involved in lipophagy in macrophages, highlighting their importance in the process. Targeting these proteins to enhance lipophagy for promoting cholesterol efflux in foam cells may represent a novel therapeutic strategy for atherosclerosis.

AUTOPHAGY (2021)

Article Chemistry, Analytical

Exploring the Microbiome-Wide Lysine Acetylation, Succinylation, and Propionylation in Human Gut Microbiota

Xu Zhang, Kai Cheng, Zhibin Ning, Janice Mayne, Krystal Walker, Hao Chi, Charles L. Farnsworth, Kimberly Lee, Daniel Figeys

Summary: This study demonstrates that serial enrichment using motif antibodies can capture peptides containing lysine acetylation, propionylation, and succinylation from human gut microbiome samples, providing a new bioinformatic workflow for the study of lysine acylations in the microbiome. The characterization of modification-specific metaproteomes reveals differential distribution of lysine acylations in microbial species with different metabolic capabilities.

ANALYTICAL CHEMISTRY (2021)

Article Gastroenterology & Hepatology

Evaluating live microbiota biobanking using an ex vivo microbiome assay and metaproteomics

Xu Zhang, Krystal Walker, Janice Mayne, Leyuan Li, Zhibin Ning, Alain Stintzi, Daniel Figeys

Summary: This study developed a rapid method for evaluating the viability of live microbiota in biobanks and found that long-term freezing in deoxygenated glycerol buffer has minimal detrimental effects on the cultivability of fecal microbiota.

GUT MICROBES (2022)

Article Clinical Neurology

Characteristics of the Ontario Neurodegenerative Disease Research Initiative cohort

Kelly M. Sunderland, Derek Beaton, Stephen R. Arnott, Peter Kleinstiver, Donna Kwan, Jane M. Lawrence-Dewar, Joel Ramirez, Brian Tan, Robert Bartha, Sandra E. Black, Michael Borrie, Donald Brien, Leanne K. Casaubon, Brian C. Coe, Benjamin Cornish, Allison A. Dilliott, Dar Dowlatshahi, Elizabeth Finger, Corinne Fischer, Andrew Frank, Julia Fraser, Morris Freedman, Barry Greenberg, David A. Grimes, Ayman Hassan, Wendy Hatch, Robert A. Hegele, Christopher Hudson, Mandar Jog, Sanjeev Kumar, Anthony Lang, Brian Levine, Wendy Lou, Jennifer Mandzia, Connie Marras, William McIlroy, Manuel Montero-Odasso, David G. Munoz, Douglas P. Munoz, Joseph B. Orange, David S. Park, Stephen H. Pasternak, Frederico Pieruccini-Faria, Tarek K. Rajji, Angela C. Roberts, John F. Robinson, Ekaterina Rogaeva, Demetrios J. Sahlas, Gustavo Saposnik, Christopher J. M. Scott, Dallas Seitz, Christen Shoesmith, Thomas D. L. Steeves, Michael J. Strong, Stephen C. Strother, Richard H. Swartz, Sean Symons, David F. Tang-Wai, Maria Carmela Tartaglia, Angela K. Troyer, John Turnbull, Lorne Zinman, Paula M. McLaughlin, Mario Masellis, Malcolm A. Binns

Summary: This is a multi-site, longitudinal, observational cohort study that aims to understand the impact of neurodegenerative and cerebrovascular diseases on dementia presentation. The study recruited 520 participants with prevalent neurodegenerative and cerebrovascular diseases and comprehensively assessed them. Results showed that the participants were predominantly White males with higher education levels. The data will be shared with the global scientific community to identify markers of disease severity, progression, and therapy targets.

ALZHEIMERS & DEMENTIA (2023)

Article Biology

Cdk5-mediated JIP1 phosphorylation regulates axonal outgrowth through Notch1 inhibition

Doo Soon Im, Alvin Joselin, Devon Svoboda, Tesuya Takano, Maxime W. C. Rousseaux, Steve Callaghan, Ruth S. Slack, Shin-ichi Hisanaga, Roger J. Davis, David S. Park, Dianbo Qu

Summary: Our study reveals a critical signaling axis involving Cdk5-JIP1-Itch-Notch1 that plays an important role in the regulation of CNS development. Further investigation into how this pathway integrates with additional pathways regulating axonal growth will enhance our understanding of normal central nervous system development and pathological conditions.

BMC BIOLOGY (2022)

Article Microbiology

MetaProClust-MS1: an MS1 Profiling Approach for Large-Scale Microbiome Screening

Caitlin M. A. Simopoulos, Zhibin Ning, Leyuan Li, Mona M. Khamis, Xu Zhang, Mathieu Lavallee-Adam, Daniel Figeys

Summary: Metaproteomics is a useful tool for studying microbial communities, but the data acquisition process can be time-consuming and resource-intensive. In this study, the researchers developed a computational framework called MetaProClust-MS1 to prioritize samples for follow-up analysis using tandem mass spectrometry (MS/MS). The framework successfully identified microbial responses and disease diagnostic features in gut microbiome data. The study also demonstrated the potential of MetaProClust-MS1 in clinical settings and large-scale metaproteomic screening.

MSYSTEMS (2022)

Article Microbiology

Comprehensive Assessment of Functional Effects of Commonly Used Sugar Substitute Sweeteners on Ex Vivo Human Gut Microbiome

Zhongzhi Sun, Wenju Wang, Leyuan Li, Xu Zhang, Zhibin Ning, Janice Mayne, Krystal Walker, Alain Stintzi, Daniel Figeysa

Summary: The composition and function of the human gut microbiome are closely related to human health. Sugar substitute sweeteners, as commonly used food additives, have potential impacts on the functionality of the microbiome. This study systematically investigated the responses of the human gut microbiome to commonly used sugar substitute sweeteners and revealed the associations between sweetener properties and metaproteomic responses of individual microbiomes.

MICROBIOLOGY SPECTRUM (2022)

Review Nutrition & Dietetics

Butyrate?s role in human health and the current progress towards its clinical application to treat gastrointestinal disease

Kendra Hodgkinson, Faiha El Abbar, Peter Dobranowski, Juliana Manoogian, James Butcher, Daniel Figeys, David Mack, Alain Stintzi

Summary: Butyrate, produced by gut microbiota through fermentation of dietary fiber, serves as a key energy source for colonocytes. It has important roles in gastrointestinal health, impacting both host and microbial functions. Maintaining optimal butyrate levels improves gastrointestinal health by supporting colonocyte function, decreasing inflammation, maintaining the gut barrier, and promoting a healthy microbiome. However, increasing butyrate levels in humans and reversing negative outcomes have yielded mixed results, despite its protective actions in intestinal diseases.

CLINICAL NUTRITION (2023)

Article Cell Biology

The Rb/E2F axis is a key regulator of the molecular signatures instructing the quiescent and activated adult neural stem cell state

Bensun C. Fong, Imane Chakroun, Mohamed Ariff Iqbal, Smitha Paul, Joseph Bastasic, Daniel O'Neil, Edward Yakubovich, Anthony T. Bejjani, Nastaran Ahmadi, Anthony Carter, Alysen Clark, Gustavo Leone, David S. Park, Noel Ghanem, Renaud Vandenbosch, Ruth S. Slack

Summary: The Rb/E2F axis is an important regulator of neural stem cell fate, coordinating cell-cycle control with NSC activation and quiescence transitions.

CELL REPORTS (2022)

Article Chemistry, Analytical

Assessing the Dark Field of Metaproteome

Haonan Duan, Kai Cheng, Zhibin Ning, Leyuan Li, Janice Mayne, Zhongzhi Sun, Daniel Figeys

Summary: The human gut microbiome is a complex system consisting of hundreds of species, and metaproteomics is a useful tool for studying their expressed functions. However, many lower abundance species cannot be detected by current metaproteomic techniques, which is a challenge in metaproteomics. In this study, the researchers investigated the minimal abundance of a bacterium in a microbiome that can be detected by shotgun metaproteomics. They found that the number of identified peptides and peptide intensity from a 15N-labeled E. coli were linearly correlated with the spike-in levels, even at low abundances. They also discovered that the match-between-run strategy increased the number of quantified peptides, even for low-abundance species.

ANALYTICAL CHEMISTRY (2022)

Article Biochemical Research Methods

MetaLab-MAG: A Metaproteomic Data Analysis Platform for Genome-Level Characterization of Microbiomes from the Metagenome-Assembled Genomes Database

Kai Cheng, Zhibin Ning, Leyuan Li, Xu Zhang, Joeselle M. Serrana, Janice Mayne, Daniel Figeys

Summary: The studies of microbial communities have become increasingly important in various fields, and metaproteomics is a powerful tool for interpreting the roles of community members. However, analyzing metaproteomic data sets at the genome resolution is still challenging. In this study, a specially designed tool called MetaLab-MAG was developed for characterizing microbiomes from metagenome-assembled genome databases.

JOURNAL OF PROTEOME RESEARCH (2022)

Article Biochemical Research Methods

An economic and robust TMT labeling approach for high throughput proteomic and metaproteomic analysis

Marybeth Creskey, Leyuan Li, Zhibin Ning, Emily E. F. Fekete, Janice Mayne, Krystal Walker, Anna Ampaw, Robert Ben, Xu Zhang, Daniel Figeys

Summary: This study demonstrates that the TMT labeling procedures can be simplified by using pre-aliquoted dry TMT reagents, which achieve high labeling efficiency in both microbiome and mammalian cell line samples. The workflow was successfully applied to analyze 97 samples and consistently revealed microbiome responses. This study supports the use of pre-aliquoted, dried, and stored TMT reagents for robust quantitative proteomics and metaproteomics in high throughput applications.

PROTEOMICS (2023)

Article Biochemical Research Methods

Update on the Efficacy of Cognitive Rehabilitation After Moderate to Severe Traumatic Brain Injury: A Scoping Review

Kai Cheng, Zhibin Ning, Leyuan Li, Xu Zhang, Joeselle M. Serrana, Janice Mayne, Daniel Figeys

Summary: The research on microbial communities has gained attention in agriculture, environment, and human health. Metaproteomics has become a powerful tool to understand the roles of microbes through analyzing their expressed proteins. However, analyzing metaproteomic data at genome resolution is challenging due to the lack of efficient bioinformatics tools. Here, we introduce MetaLab-MAG, a specialized tool for microbiome characterization from metagenome-assembled genomes databases. MetaLab-MAG performs well compared to directly searching the gene catalog protein database, allowing quantification of genome-level microbiota compositions and supporting different quantification strategies. It overcomes the obstacles in metaproteomic data analysis and provides comprehensive information from microbiomes to researchers.

JOURNAL OF PROTEOME RESEARCH (2023)

Article Biochemistry & Molecular Biology

MetaPep: A core peptide database for faster human gut metaproteomics database searches

Zhongzhi Sun, Zhibin Ning, Kai Cheng, Haonan Duan, Qing Wu, Janice Mayne, Daniel Figeys

Summary: Metaproteomics studies functional changes in the human gut microbiome and peptide identification is a crucial step in this research. However, the large search space complicates peptide identification methods. This study constructed MetaPep, a core peptide database, and demonstrated its importance for human gut metaproteomics research.

COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2023)

暂无数据