The mutation patterns in B-cell immunoglobulin receptors reflect the influence of selection acting at multiple time-scales

pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires

(2014) Jason A. Vander Heiden et al.   BIOINFORMATICS

High-resolution antibody dynamics of vaccine-induced immune responses

(2014) Uri Laserson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

B cells populating the multiple sclerosis brain mature in the draining cervical lymph nodes

(2014) J. N. H. Stern et al.   Science Translational Medicine

Integrating B Cell Lineage Information into Statistical Tests for Detecting Selection in Ig Sequences

(2013) M. Uduman et al.   JOURNAL OF IMMUNOLOGY

Models of Somatic Hypermutation Targeting and Substitution Based on Synonymous Mutations from High-Throughput Immunoglobulin Sequencing Data

(2013) Gur Yaari et al.   Frontiers in Immunology

Multi Step Selection in Ig H Chains is Initially Focused on CDR3 and Then on Other CDR Regions

(2013) Gilad Liberman et al.   Frontiers in Immunology

Quantifying selection in high-throughput Immunoglobulin sequencing data sets

(2012) Gur Yaari et al.   NUCLEIC ACIDS RESEARCH

Rep-Seq: uncovering the immunological repertoire through next-generation sequencing

(2011) Jennifer Benichou et al.   IMMUNOLOGY

Detecting selection in immunoglobulin sequences

(2011) M. Uduman et al.   NUCLEIC ACIDS RESEARCH

Taking Advantage: High-Affinity B Cells in the Germinal Center Have Lower Death Rates, but Similar Rates of Division, Compared to Low-Affinity Cells

(2009) S. M. Anderson et al.   JOURNAL OF IMMUNOLOGY

V-region mutation in vitro, in vivo, and in silico reveal the importance of the enzymatic properties of AID and the sequence environment

(2009) T. MacCarthy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Improved methods for detecting selection by mutation analysis of Ig V region sequences

(2008) Uri Hershberg et al.   INTERNATIONAL IMMUNOLOGY