Transcriptional analysis of endocrine disruption using zebrafish and massively parallel sequencing
出版年份 2014 全文链接
标题
Transcriptional analysis of endocrine disruption using zebrafish and massively parallel sequencing
作者
关键词
-
出版物
JOURNAL OF MOLECULAR ENDOCRINOLOGY
Volume 52, Issue 3, Pages R241-R256
出版商
Bioscientifica
发表日期
2014-05-22
DOI
10.1530/jme-13-0219
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Comparison of three next-generation sequencing platforms for metagenomic sequencing and identification of pathogens in blood
- (2014) Kenneth G Frey et al. BMC GENOMICS
- The light-induced transcriptome of the zebrafish pineal gland reveals complex regulation of the circadian clockwork by light
- (2014) Zohar Ben-Moshe et al. NUCLEIC ACIDS RESEARCH
- Biodegradation of Endocrine Disruptors in Solid-Liquid Two-Phase Partitioning Systems by Enrichment Cultures
- (2013) Richard Villemur et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Molecular Mechanisms of Toxicity of Silver Nanoparticles in Zebrafish Embryos
- (2013) Ronny van Aerle et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- The new sequencer on the block: comparison of Life Technology’s Proton sequencer to an Illumina HiSeq for whole-exome sequencing
- (2013) Joseph F. Boland et al. HUMAN GENETICS
- The Effects of Nanomaterials as Endocrine Disruptors
- (2013) Ivo Iavicoli et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Contaminants and impoSEX: transcriptomics of contaminant-induced sex change
- (2013) Robert W. Chapman et al. MOLECULAR ECOLOGY
- Principles of transcriptome analysis and gene expression quantification: an RNA-seq tutorial
- (2013) Jochen B. W. Wolf Molecular Ecology Resources
- Genomics: Zebrafish earns its stripes
- (2013) Alexander F. Schier NATURE
- The zebrafish reference genome sequence and its relationship to the human genome
- (2013) Kerstin Howe et al. NATURE
- Count-based differential expression analysis of RNA sequencing data using R and Bioconductor
- (2013) Simon Anders et al. Nature Protocols
- The cytochrome P450 genesis locus: the origin and evolution of animal cytochrome P450s
- (2013) D. R. Nelson et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Low Concentrations of Silver Nanoparticles in Biosolids Cause Adverse Ecosystem Responses under Realistic Field Scenario
- (2013) Benjamin P. Colman et al. PLoS One
- Rapid 16S rRNA Next-Generation Sequencing of Polymicrobial Clinical Samples for Diagnosis of Complex Bacterial Infections
- (2013) Stephen J. Salipante et al. PLoS One
- Genome-Wide Identification of Molecular Pathways and Biomarkers in Response to Arsenic Exposure in Zebrafish Liver
- (2013) Hongyan Xu et al. PLoS One
- Molecular Analysis of Endocrine Disruption in Hornyhead Turbot at Wastewater Outfalls in Southern California Using a Second Generation Multi-Species Microarray
- (2013) Michael E. Baker et al. PLoS One
- Global gene expression analysis reveals pathway differences between teratogenic and non-teratogenic exposure concentrations of bisphenol A and 17β-estradiol in embryonic zebrafish
- (2013) Katerine S. Saili et al. REPRODUCTIVE TOXICOLOGY
- What are the physiological estrogens?
- (2013) Michael E. Baker STEROIDS
- The mineralocorticoid signaling pathway throughout development: Expression, regulation and pathophysiological implications
- (2012) Laetitia Martinerie et al. BIOCHIMIE
- Pacific biosciences sequencing technology for genotyping and variation discovery in human data
- (2012) Mauricio O Carneiro et al. BMC GENOMICS
- A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers
- (2012) Michael Quail et al. BMC GENOMICS
- The Ubiquitous Mineralocorticoid Receptor: Clinical Implications
- (2012) Urseline A. Hawkins et al. CURRENT HYPERTENSION REPORTS
- Going beyond five bases in DNA sequencing
- (2012) Jonas Korlach et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Progress in Ion Torrent semiconductor chip based sequencing
- (2012) Barry Merriman et al. ELECTROPHORESIS
- Biosensor Zebrafish Provide New Insights into Potential Health Effects of Environmental Estrogens
- (2012) Okhyun Lee et al. ENVIRONMENTAL HEALTH PERSPECTIVES
- Finished bacterial genomes from shotgun sequence data
- (2012) F. J. Ribeiro et al. GENOME RESEARCH
- Rapid Development of Microsatellite Markers for the Endangered Fish Schizothorax biddulphi (Günther) Using Next Generation Sequencing and Cross-Species Amplification
- (2012) Wei Luo et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Transcriptomics andin vivotests reveal novel mechanisms underlying endocrine disruption in an ecological sentinel,Nucella lapillus
- (2012) Sonia Pascoal et al. MOLECULAR ECOLOGY
- Hybrid error correction and de novo assembly of single-molecule sequencing reads
- (2012) Sergey Koren et al. NATURE BIOTECHNOLOGY
- 3D Models of MBP, a Biologically Active Metabolite of Bisphenol A, in Human Estrogen Receptor α and Estrogen Receptor β
- (2012) Michael E. Baker et al. PLoS One
- Brain on stress: How the social environment gets under the skin
- (2012) B. S. McEwen PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Steroid biosynthesis and prostate cancer
- (2012) Nima Sharifi et al. STEROIDS
- Insights from the structure of estrogen receptor into the evolution of estrogens: Implications for endocrine disruption
- (2011) Michael E. Baker BIOCHEMICAL PHARMACOLOGY
- Identification of novel transcripts in annotated genomes using RNA-Seq
- (2011) A. Roberts et al. BIOINFORMATICS
- Identification and correction of systematic error in high-throughput sequence data
- (2011) Frazer Meacham et al. BMC BIOINFORMATICS
- Sequencing and characterization of the guppy (Poecilia reticulata) transcriptome
- (2011) Bonnie A Fraser et al. BMC GENOMICS
- Identification of cis regulatory features in the embryonic zebrafish genome through large-scale profiling of H3K4me1 and H3K4me3 binding sites
- (2011) Aaron W. Aday et al. DEVELOPMENTAL BIOLOGY
- Visualization of Estrogen Receptor Transcriptional Activation in Zebrafish
- (2011) Daniel A. Gorelick et al. ENDOCRINOLOGY
- Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition
- (2011) Håvard Aanes et al. GENOME RESEARCH
- Sequencing technologies and genome sequencing
- (2011) Chandra Shekhar Pareek et al. JOURNAL OF APPLIED GENETICS
- Disruption of androgen receptor signaling in males by environmental chemicals
- (2011) Doug C. Luccio-Camelo et al. JOURNAL OF STEROID BIOCHEMISTRY AND MOLECULAR BIOLOGY
- Bisphenol A: An endocrine disruptor with widespread exposure and multiple effects
- (2011) Beverly S. Rubin JOURNAL OF STEROID BIOCHEMISTRY AND MOLECULAR BIOLOGY
- Field guide to next-generation DNA sequencers
- (2011) TRAVIS C. GLENN Molecular Ecology Resources
- Performance comparison of whole-genome sequencing platforms
- (2011) Hugo Y K Lam et al. NATURE BIOTECHNOLOGY
- Origins of theE. coliStrain Causing an Outbreak of Hemolytic–Uremic Syndrome in Germany
- (2011) David A. Rasko et al. NEW ENGLAND JOURNAL OF MEDICINE
- Comparison of Sequence Reads Obtained from Three Next-Generation Sequencing Platforms
- (2011) Shingo Suzuki et al. PLoS One
- Improving RNA-Seq expression estimates by correcting for fragment bias
- (2011) Adam Roberts et al. GENOME BIOLOGY
- Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems
- (2011) André E Minoche et al. GENOME BIOLOGY
- Structural Overview of the Nuclear Receptor Superfamily: Insights into Physiology and Therapeutics
- (2010) Pengxiang Huang et al. Annual Review of Physiology
- Does Breast Cancer Start in the Womb?
- (2010) Ana M. Soto et al. BASIC & CLINICAL PHARMACOLOGY & TOXICOLOGY
- RNA deep sequencing of the Atlantic cod transcriptome
- (2010) Steinar D. Johansen et al. Comparative Biochemistry and Physiology D-Genomics & Proteomics
- What are nuclear receptor ligands?
- (2010) Frances M. Sladek MOLECULAR AND CELLULAR ENDOCRINOLOGY
- Nuclear hormone receptors in chordates
- (2010) Stéphanie Bertrand et al. MOLECULAR AND CELLULAR ENDOCRINOLOGY
- The gene regulatory networks controlled by estrogens
- (2010) Hui Gao et al. MOLECULAR AND CELLULAR ENDOCRINOLOGY
- Evolution of promiscuous nuclear hormone receptors: LXR, FXR, VDR, PXR, and CAR
- (2010) Matthew D. Krasowski et al. MOLECULAR AND CELLULAR ENDOCRINOLOGY
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- De novo assembly and analysis of RNA-seq data
- (2010) Gordon Robertson et al. NATURE METHODS
- RNA sequencing: advances, challenges and opportunities
- (2010) Fatih Ozsolak et al. NATURE REVIEWS GENETICS
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- (2010) Chen-Shan Chin et al. NEW ENGLAND JOURNAL OF MEDICINE
- ZFIN: enhancements and updates to the zebrafish model organism database
- (2010) Y. Bradford et al. NUCLEIC ACIDS RESEARCH
- Advances in pharmacogenomics technologies
- (2010) C Ramana Bhasker et al. PHARMACOGENOMICS
- Serum bisphenol A pharmacokinetics and prostate neoplastic responses following oral and subcutaneous exposures in neonatal Sprague–Dawley rats
- (2010) Gail S. Prins et al. REPRODUCTIVE TOXICOLOGY
- Spatial and Temporal Variations of Groundwater Arsenic in South and Southeast Asia
- (2010) S. Fendorf et al. SCIENCE
- ERβ: recent understanding of estrogen signaling
- (2010) Nobuhiro Sugiyama et al. TRENDS IN ENDOCRINOLOGY AND METABOLISM
- Differential expression analysis for sequence count data
- (2010) Simon Anders et al. GENOME BIOLOGY
- Massively Parallel Sequencing: The Next Big Thing in Genetic Medicine
- (2009) Tracy Tucker et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Generation of a fluorescent transgenic zebrafish for detection of environmental estrogens
- (2009) Hao Chen et al. AQUATIC TOXICOLOGY
- DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
- (2009) Likun Wang et al. BIOINFORMATICS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Parallel DNA pyrosequencing unveils new zebrafish microRNAs
- (2009) Ana R Soares et al. BMC GENOMICS
- Next-Generation Sequencing: From Basic Research to Diagnostics
- (2009) K. V. Voelkerding et al. CLINICAL CHEMISTRY
- Bisphenol-A and the Great Divide: A Review of Controversies in the Field of Endocrine Disruption
- (2009) Laura N. Vandenberg et al. ENDOCRINE REVIEWS
- Endocrine-Disrupting Chemicals: An Endocrine Society Scientific Statement
- (2009) Evanthia Diamanti-Kandarakis et al. ENDOCRINE REVIEWS
- Sexual Reprogramming and Estrogenic Sensitization in Wild Fish Exposed to Ethinylestradiol
- (2009) Anke Lange et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- PHARMACEUTICAL METABOLITES IN THE ENVIRONMENT: ANALYTICAL CHALLENGES AND ECOLOGICAL RISKS
- (2009) Mary D. Celiz et al. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY
- Reconsidering the Roles of the Mineralocorticoid Receptor
- (2009) John W. Funder HYPERTENSION
- Interpreting endocrine disruption from an integrative biology perspective
- (2009) Ana M. Soto et al. MOLECULAR AND CELLULAR ENDOCRINOLOGY
- Role of nutrition and environmental endocrine disrupting chemicals during the perinatal period on the aetiology of obesity☆
- (2009) Jerrold J. Heindel et al. MOLECULAR AND CELLULAR ENDOCRINOLOGY
- Deep sequencing of the zebrafish transcriptome response to mycobacterium infection
- (2009) Zoltán Hegedűs et al. MOLECULAR IMMUNOLOGY
- Transcriptome sequencing to detect gene fusions in cancer
- (2009) Christopher A. Maher et al. NATURE
- A small-cell lung cancer genome with complex signatures of tobacco exposure
- (2009) Erin D. Pleasance et al. NATURE
- How to map billions of short reads onto genomes
- (2009) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Computation for ChIP-seq and RNA-seq studies
- (2009) Shirley Pepke et al. NATURE METHODS
- A critical analysis of the biological impacts of plasticizers on wildlife
- (2009) J. Oehlmann et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Independent elaboration of steroid hormone signaling pathways in metazoans
- (2009) G. V. Markov et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Exposure and effects assessment of persistent organohalogen contaminants in arctic wildlife and fish
- (2009) Robert J. Letcher et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Glucocorticoid and mineralocorticoid action: Why should we consider influences by environmental chemicals?
- (2008) Alex Odermatt et al. BIOCHEMICAL PHARMACOLOGY
- Zebrafish (Danio rerio) as a model organism for investigating endocrine disruption
- (2008) Helmut Segner COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY
- Analysis of Endocrine Disruption in Southern California Coastal Fish Using an Aquatic Multispecies Microarray
- (2008) Michael E. Baker et al. ENVIRONMENTAL HEALTH PERSPECTIVES
- A critical evaluation of the environmental risk assessment for plasticizers in the freshwater environment in Europe, with special emphasis on bisphenol A and endocrine disruption
- (2008) Jörg Oehlmann et al. ENVIRONMENTAL RESEARCH
- Reproductive Disruption in Fish Downstream from an Estrogenic Wastewater Effluent
- (2008) Alan M. Vajda et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- Fetal and postnatal environmental exposures and reproductive health effects in the male: recent findings
- (2008) Shanna H. Swan FERTILITY AND STERILITY
- A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning
- (2008) A. Valouev et al. GENOME RESEARCH
- RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
- (2008) J. C. Marioni et al. GENOME RESEARCH
- Mapping short DNA sequencing reads and calling variants using mapping quality scores
- (2008) H. Li et al. GENOME RESEARCH
- Keeping Up With the Next Generation
- (2008) John R. ten Bosch et al. JOURNAL OF MOLECULAR DIAGNOSTICS
- Accurate whole human genome sequencing using reversible terminator chemistry
- (2008) David R. Bentley et al. NATURE
- RNA-Seq: a revolutionary tool for transcriptomics
- (2008) Zhong Wang et al. NATURE REVIEWS GENETICS
- Real-Time DNA Sequencing from Single Polymerase Molecules
- (2008) J. Eid et al. SCIENCE
- Exposure of the U.S. Population to Bisphenol A and 4- tertiary -Octylphenol: 2003–2004
- (2007) Antonia M. Calafat et al. ENVIRONMENTAL HEALTH PERSPECTIVES
- Ultra-high-throughput sequencing, microarray-based genomic selection and pharmacogenomics
- (2007) Gary Hardiman PHARMACOGENOMICS
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