Enhanced expression of genes involved in initial xylose metabolism and the oxidative pentose phosphate pathway in the improved xylose-utilizing Saccharomyces cerevisiae through evolutionary engineering

Mass balance and transformation of corn stover by pretreatment with different dilute organic acids

(2012) Lei Qin et al.   BIORESOURCE TECHNOLOGY

Characterization of non-oxidative transaldolase and transketolase enzymes in the pentose phosphate pathway with regard to xylose utilization by recombinant Saccharomyces cerevisiae

(2012) Akinori Matsushika et al.   ENZYME AND MICROBIAL TECHNOLOGY

Evolutionary engineering of Saccharomyces cerevisiae for efficient aerobic xylose consumption

(2012) Gionata Scalcinati et al.   FEMS YEAST RESEARCH

Xylose isomerase overexpression along with engineering of the pentose phosphate pathway and evolutionary engineering enable rapid xylose utilization and ethanol production by Saccharomyces cerevisiae

(2012) Hang Zhou et al.   METABOLIC ENGINEERING

High expression of XYL2 coding for xylitol dehydrogenase is necessary for efficient xylose fermentation by engineered Saccharomyces cerevisiae

(2012) Soo Rin Kim et al.   METABOLIC ENGINEERING

Customized optimization of metabolic pathways by combinatorial transcriptional engineering

(2012) Jing Du et al.   NUCLEIC ACIDS RESEARCH

Decreased Xylitol Formation during Xylose Fermentation in Saccharomyces cerevisiae Due to Overexpression of Water-Forming NADH Oxidase

(2011) Guo-Chang Zhang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Driving Forces Enable High-Titer Anaerobic 1-Butanol Synthesis in Escherichia coli

(2011) Claire R. Shen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Alteration of xylose reductase coenzyme preference to improve ethanol production by Saccharomyces cerevisiae from high xylose concentrations

(2011) Mingyong Xiong et al.   BIORESOURCE TECHNOLOGY

Adaptive laboratory evolution—harnessing the power of biology for metabolic engineering

(2011) Vasiliy A Portnoy et al.   CURRENT OPINION IN BIOTECHNOLOGY

Kinetic modelling reveals current limitations in the production of ethanol from xylose by recombinant Saccharomyces cerevisiae

(2011) Nádia Skorupa Parachin et al.   METABOLIC ENGINEERING

Improvement of xylose fermentation in respiratory-deficient xylose-fermenting Saccharomyces cerevisiae

(2011) Bingyin Peng et al.   METABOLIC ENGINEERING

The Stress Response Factors Yap6, Cin5, Phd1, and Skn7 Direct Targeting of the Conserved Co-Repressor Tup1-Ssn6 in S. cerevisiae

(2011) Sean E. Hanlon et al.   PLoS One

Unravelling evolutionary strategies of yeast for improving galactose utilization through integrated systems level analysis

(2011) K.-K. Hong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Saccharomyces cerevisiae engineered for xylose metabolism requires gluconeogenesis and the oxidative branch of the pentose phosphate pathway for aerobic xylose assimilation

(2011) Ronald E. Hector et al.   YEAST

Limitations in Xylose-Fermenting Saccharomyces cerevisiae, Made Evident through Comprehensive Metabolite Profiling and Thermodynamic Analysis

(2010) M. Klimacek et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effect of Initial Cell Concentration on Ethanol Production by Flocculent Saccharomyces cerevisiae with Xylose-Fermenting Ability

(2010) Akinori Matsushika et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Transcriptome shifts in response to furfural and acetic acid in Saccharomyces cerevisiae

(2010) Bing-Zhi Li et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Comparative lipidomic profiling of xylose-metabolizing S. cerevisiae and its parental strain in different media reveals correlations between membrane lipids and fermentation capacity

(2010) Jinmei Xia et al.   BIOTECHNOLOGY AND BIOENGINEERING

Improved xylose and arabinose utilization by an industrial recombinant Saccharomyces cerevisiae strain using evolutionary engineering

(2010) Rosa Garcia Sanchez et al.   Biotechnology for Biofuels

Engineering industrial Saccharomyces cerevisiae strains for xylose fermentation and comparison for switchgrass conversion

(2010) Ronald E. Hector et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Metabolome, transcriptome and metabolic flux analysis of arabinose fermentation by engineered Saccharomyces cerevisiae

(2010) H. Wouter Wisselink et al.   METABOLIC ENGINEERING

Fermentation of mixed glucose-xylose substrates by engineered strains of Saccharomyces cerevisiae: role of the coenzyme specificity of xylose reductase, and effect of glucose on xylose utilization

(2010) Stefan Krahulec et al.   Microbial Cell Factories

Ethanol production from xylose in engineered Saccharomyces cerevisiae strains: current state and perspectives

(2009) Akinori Matsushika et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Engineering of a matched pair of xylose reductase and xylitol dehydrogenase for xylose fermentation by Saccharomyces cerevisiae

(2009) Stefan Krahulec et al.   Biotechnology Journal

Increased expression of the oxidative pentose phosphate pathway and gluconeogenesis in anaerobically growing xylose-utilizing Saccharomyces cerevisiae

(2009) David Runquist et al.   Microbial Cell Factories

Adaptive Evolution of a Lactose-Consuming Saccharomyces cerevisiae Recombinant

(2008) P. M. R. Guimaraes et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Expression of a heterologous xylose transporter in a Saccharomyces cerevisiae strain engineered to utilize xylose improves aerobic xylose consumption

(2008) Ronald E. Hector et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Expression of protein engineered NADP+-dependent xylitol dehydrogenase increases ethanol production from xylose in recombinant Saccharomyces cerevisiae

(2008) Akinori Matsushika et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Comparing the xylose reductase/xylitol dehydrogenase and xylose isomerase pathways in arabinose and xylose fermenting Saccharomyces cerevisiae strains

(2008) Maurizio Bettiga et al.   Biotechnology for Biofuels

Improvement of ethanol productivity during xylose and glucose co-fermentation by xylose-assimilating S. cerevisiae via expression of glucose transporter Sut1

(2008) Satoshi Katahira et al.   ENZYME AND MICROBIAL TECHNOLOGY

Efficient bioethanol production from xylose by recombinant saccharomyces cerevisiae requires high activity of xylose reductase and moderate xylulokinase activity

(2008) Akinori Matsushika et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols