Evidence for complex selection on four-fold degenerate sites inDrosophila melanogaster

Genomic Variation in Natural Populations of Drosophila melanogaster

(2012) C. H. Langley et al.   GENETICS

Unconstrained evolution in short introns? - An analysis of genome-wide polymorphism and divergence data from Drosophila

(2012) F. Clemente et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

The allele-frequency spectrum in a decoupled Moran model with mutation, drift, and directional selection, assuming small mutation rates

(2012) Claus Vogl et al.   THEORETICAL POPULATION BIOLOGY

Faster than Neutral Evolution of Constrained Sequences: The Complex Interplay of Mutational Biases and Weak Selection

(2011) David S. Lawrie et al.   Genome Biology and Evolution

Drosophila melanogaster recombination rate calculator

(2010) Anna-Sophie Fiston-Lavier et al.   GENE

A Simple Multiallele Model and Its Application to Identifying Preferred-Unpreferred Codons Using Polymorphism Data

(2010) K. Zeng   MOLECULAR BIOLOGY AND EVOLUTION

On the Utility of Short Intron Sequences as a Reference for the Detection of Positive and Negative Selection in Drosophila

(2010) J. Parsch et al.   MOLECULAR BIOLOGY AND EVOLUTION

The developmental transcriptome of Drosophila melanogaster

(2010) Brenton R. Graveley et al.   NATURE

Sufficiency of the number of segregating sites in the limit under finite-sites mutation

(2010) Arindam RoyChoudhury et al.   THEORETICAL POPULATION BIOLOGY

Locus-Specific Decoupling of Base Composition Evolution at Synonymous Sites and Introns along the Drosophila melanogaster and Drosophila sechellia Lineages

(2009) Vanessa L. Bauer DuMont et al.   Genome Biology and Evolution

Studying Patterns of Recent Evolution at Synonymous Sites and Intronic Sites in Drosophila melanogaster

(2009) Kai Zeng et al.   JOURNAL OF MOLECULAR EVOLUTION

Strong Evidence for Lineage and Sequence Specificity of Substitution Rates and Patterns in Drosophila

(2009) N. D. Singh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Selection on Codon Bias

(2008) Ruth Hershberg et al.   Annual Review of Genetics

The Polymorphism Frequency Spectrum of Finitely Many Sites Under Selection

(2008) M. M. Desai et al.   GENETICS

Testing for Neutrality in Samples With Sequencing Errors

(2008) G. Achaz   GENETICS

Accurate whole human genome sequencing using reversible terminator chemistry

(2008) David R. Bentley et al.   NATURE

Contrasting the Efficacy of Selection on the X and Autosomes in Drosophila

(2007) N. D. Singh et al.   MOLECULAR BIOLOGY AND EVOLUTION