标题
Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM)
作者
关键词
-
出版物
NUCLEIC ACIDS RESEARCH
Volume -, Issue -, Pages gkv1012
出版商
Oxford University Press (OUP)
发表日期
2015-10-07
DOI
10.1093/nar/gkv1012
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters
- (2015) Tilmann Weber et al. NUCLEIC ACIDS RESEARCH
- An automated Genomes-to-Natural Products platform (GNP) for the discovery of modular natural products
- (2015) Chad W. Johnston et al. Nature Communications
- ChemDoodle Web Components: HTML5 toolkit for chemical graphics, interfaces, and informatics
- (2015) Melanie C Burger Journal of Cheminformatics
- Expanding our Understanding of Sequence-Function Relationships of Type II Polyketide Biosynthetic Gene Clusters: Bioinformatics-Guided Identification of Frankiamicin A from Frankia sp. EAN1pec
- (2015) Yasushi Ogasawara et al. PLoS One
- Insights into Secondary Metabolism from a Global Analysis of Prokaryotic Biosynthetic Gene Clusters
- (2014) Peter Cimermancic et al. CELL
- An Evolutionary Model Encompassing Substrate Specificity and Reactivity of Type I Polyketide Synthase Thioesterases
- (2014) Taylor P. A. Hari et al. CHEMBIOCHEM
- Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology
- (2014) Molly K Gibson et al. ISME Journal
- Identification and characterization of the spiruchostatin biosynthetic gene cluster enable yield improvement by overexpressing a transcriptional activator
- (2014) Vishwakanth Y. Potharla et al. JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY
- Structural investigation of ribosomally synthesized natural products by hypothetical structure enumeration and evaluation using tandem MS
- (2014) Q. Zhang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Pep2Path: Automated Mass Spectrometry-Guided Genome Mining of Peptidic Natural Products
- (2014) Marnix H. Medema et al. PLoS Computational Biology
- Comparative genomics of actinomycetes with a focus on natural product biosynthetic genes
- (2013) James R Doroghazi et al. BMC GENOMICS
- N-Carbamoylation of 2,4-Diaminobutyrate Reroutes the Outcome in Padanamide Biosynthesis
- (2013) Yi-Ling Du et al. CHEMISTRY & BIOLOGY
- Predicting substrate specificity of adenylation domains of nonribosomal peptide synthetases and other protein properties by latent semantic indexing
- (2013) Damir Baranašić et al. JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY
- Chemical and biosynthetic evolution of the antimycin-type depsipeptides
- (2013) Stephanie A. Vanner et al. Molecular BioSystems
- Pfam: the protein families database
- (2013) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Classification of the Adenylation and Acyl-Transferase Activity of NRPS and PKS Systems Using Ensembles of Substrate Specific Hidden Markov Models
- (2013) Barzan I. Khayatt et al. PLoS One
- Glycogenomics as a mass spectrometry-guided genome-mining method for microbial glycosylated molecules
- (2013) R. D. Kersten et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- BioJava: an open-source framework for bioinformatics in 2012
- (2012) A. Prlic et al. BIOINFORMATICS
- PKMiner: a database for exploring type II polyketide synthases
- (2012) Jinki Kim et al. BMC MICROBIOLOGY
- Unveiling the Post-PKS Redox Tailoring Steps in Biosynthesis of the Type II Polyketide Antitumor Antibiotic Xantholipin
- (2012) Weike Zhang et al. CHEMISTRY & BIOLOGY
- Natural Products As Sources of New Drugs over the 30 Years from 1981 to 2010
- (2012) David J. Newman et al. JOURNAL OF NATURAL PRODUCTS
- A stand-alone adenylation domain forms amide bonds in streptothricin biosynthesis
- (2012) Chitose Maruyama et al. Nature Chemical Biology
- ClusterMine360: a database of microbial PKS/NRPS biosynthesis
- (2012) Kyle R. Conway et al. NUCLEIC ACIDS RESEARCH
- The Natural Product Domain Seeker NaPDoS: A Phylogeny Based Bioinformatic Tool to Classify Secondary Metabolite Gene Diversity
- (2012) Nadine Ziemert et al. PLoS One
- NRPSsp: non-ribosomal peptide synthase substrate predictor
- (2011) Carlos Prieto et al. BIOINFORMATICS
- ProtTest 3: fast selection of best-fit models of protein evolution
- (2011) Diego Darriba et al. BIOINFORMATICS
- Studies on the biosynthesis of the lipodepsipeptide antibiotic Ramoplanin A2
- (2011) Amanda J. Hoertz et al. BIOORGANIC & MEDICINAL CHEMISTRY
- Identification of Late-Stage Glycosylation Steps in the Biosynthetic Pathway of the Anthracycline Nogalamycin
- (2011) Vilja Siitonen et al. CHEMBIOCHEM
- Proteomics-Based Discovery of Koranimine, a Cyclic Imine Natural Product
- (2011) Bradley S. Evans et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- NRPSpredictor2—a web server for predicting NRPS adenylation domain specificity
- (2011) Marc Röttig et al. NUCLEIC ACIDS RESEARCH
- SMART 7: recent updates to the protein domain annotation resource
- (2011) I. Letunic et al. NUCLEIC ACIDS RESEARCH
- antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences
- (2011) Marnix H. Medema et al. NUCLEIC ACIDS RESEARCH
- HMMER web server: interactive sequence similarity searching
- (2011) R. D. Finn et al. NUCLEIC ACIDS RESEARCH
- Functional analysis of environmental DNA-derived type II polyketide synthases reveals structurally diverse secondary metabolites
- (2011) Z. Feng et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- Genomics-inspired discovery of natural products
- (2010) Jaclyn M Winter et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- Classification, Prediction, and Verification of the Regioselectivity of Fungal Polyketide Synthase Product Template Domains
- (2010) Yanran Li et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Insights into an Unusual Nonribosomal Peptide Synthetase Biosynthesis
- (2010) Tina M. Binz et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Extended-Connectivity Fingerprints
- (2010) David Rogers et al. Journal of Chemical Information and Modeling
- Natural Products Version 2.0: Connecting Genes to Molecules
- (2010) Christopher T. Walsh et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Biosynthesis of polyketides by trans-AT polyketide synthases
- (2010) Jörn Piel NATURAL PRODUCT REPORTS
- Chemoinformatics—an introduction for computer scientists
- (2009) Nathan Brown ACM COMPUTING SURVEYS
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
- Automated genome mining for natural products
- (2009) Michael HT Li et al. BMC BIOINFORMATICS
- Cloning and Sequencing of the Biosynthetic Gene Cluster for Saquayamycin Z and Galtamycin B and the Elucidation of the Assembly of Their Saccharide Chains
- (2009) Annette Erb et al. CHEMBIOCHEM
- Genomic basis for natural product biosynthetic diversity in the actinomycetes
- (2009) Markus Nett et al. NATURAL PRODUCT REPORTS
- Predicting new molecular targets for known drugs
- (2009) Michael J. Keiser et al. NATURE
- Quantifying biogenic bias in screening libraries
- (2009) Jérôme Hert et al. Nature Chemical Biology
- Structure-based discovery of 2-adrenergic receptor ligands
- (2009) P. Kolb et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Natural-Product Sugar Biosynthesis and Enzymatic Glycodiversification
- (2008) Christopher J. Thibodeaux et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Starter unit specificity directs genome mining of polyketide synthase pathways in fungi
- (2008) Jason M. Crawford et al. BIOORGANIC CHEMISTRY
- In silico analysis of methyltransferase domains involved in biosynthesis of secondary metabolites
- (2008) Mohd Ansari et al. BMC BIOINFORMATICS
- Natural products in drug discovery
- (2008) A HARVEY DRUG DISCOVERY TODAY
- Orchestration of Discoid Polyketide Cyclization in the Resistomycin Pathway
- (2008) Kathrin Fritzsche et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- The biosyntheticgene cluster of zorbamycin, a member of the bleomycin family of antitumor antibiotics, from Streptomyces flavoviridis ATCC 21892
- (2008) Ute Galm et al. Molecular BioSystems
- Exploiting the mosaic structure of trans-acyltransferase polyketide synthases for natural product discovery and pathway dissection
- (2008) TuAnh Nguyen et al. NATURE BIOTECHNOLOGY
- ClustScan : an integrated program package for the semi-automatic annotation of modular biosynthetic gene clusters and in silico prediction of novel chemical structures
- (2008) Antonio Starcevic et al. NUCLEIC ACIDS RESEARCH
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started