Magnesium-binding architectures in RNA crystal structures: validation, binding preferences, classification and motif detection

Techniques, tools and best practices for ligand electron-density analysis and results from their application to deposited crystal structures

(2013) Edwin Pozharski et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Validation of metal-binding sites in macromolecular structures with the CheckMyMetal web server

(2013) Heping Zheng et al.   Nature Protocols

Cations in charge: magnesium ions in RNA folding and catalysis

(2012) Jessica C Bowman et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

MetalPDB: a database of metal sites in biological macromolecular structures

(2012) Claudia Andreini et al.   NUCLEIC ACIDS RESEARCH

Overview of theCCP4 suite and current developments

(2011) Martyn D. Winn et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

MetalionRNA: computational predictor of metal-binding sites in RNA structures

(2011) Anna Philips et al.   BIOINFORMATICS

X-ray crystallography: assessment and validation of protein–small molecule complexes for drug discovery

(2011) David R Cooper et al.   Expert Opinion on Drug Discovery

MINAS—a database of Metal Ions in Nucleic AcidS

(2011) Joachim Schnabl et al.   NUCLEIC ACIDS RESEARCH

Jmol– a paradigm shift in crystallographic visualization

(2010) Robert M. Hanson   JOURNAL OF APPLIED CRYSTALLOGRAPHY

Structural rearrangements of the ribosome at the tRNA proofreading step

(2010) Lasse Jenner et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Bidentate RNA-magnesium clamps: On the origin of the special role of magnesium in RNA folding

(2010) A. S. Petrov et al.   RNA

Crystal Structure of the Eukaryotic 40S Ribosomal Subunit in Complex with Initiation Factor 1

(2010) J. Rabl et al.   SCIENCE

MolProbity: all-atom structure validation for macromolecular crystallography

(2009) Vincent B. Chen et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

RNA Folding: Thermodynamic and Molecular Descriptions of the Roles of Ions

(2008) David E. Draper   BIOPHYSICAL JOURNAL

Multinuclear NMR studies of the interaction of metal ions with adenine-nucleotides

(2008) Zoltán Szabó   COORDINATION CHEMISTRY REVIEWS

MESPEUS: a database of the geometry of metal sites in proteins

(2008) K. Hsin et al.   JOURNAL OF APPLIED CRYSTALLOGRAPHY

How to do an evaluation: pitfalls and traps

(2008) Paul C. D. Hawkins et al.   JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

Data mining of metal ion environments present in protein structures

(2008) Heping Zheng et al.   JOURNAL OF INORGANIC BIOCHEMISTRY