Validation of metal-binding sites in macromolecular structures with the CheckMyMetal web server

Techniques, tools and best practices for ligand electron-density analysis and results from their application to deposited crystal structures

(2013) Edwin Pozharski et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Visualizing ligand molecules in twilight electron density

(2013) Christian X. Weichenberger et al.   Acta Crystallographica Section F-Structural Biology and Crystallization Communications

Expectation bias and information content

(2013) Zbigniew Dauter et al.   Acta Crystallographica Section F-Structural Biology and Crystallization Communications

Advances, Interactions, and Future Developments in the CNS, Phenix, and Rosetta Structural Biology Software Systems

(2013) Paul D. Adams et al.   Annual Review of Biophysics

High-resolution structure ofBombyx morilipoprotein 7: crystallographic determination of the identity of the protein and its potential role in detoxification

(2012) Agnieszka J. Pietrzyk et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Analysis of copper–ligand bond lengths in X-ray structures of different types of copper sites in proteins

(2012) Luciano A. Abriata   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

MetalPDB: a database of metal sites in biological macromolecular structures

(2012) Claudia Andreini et al.   NUCLEIC ACIDS RESEARCH

REFMAC5 for the refinement of macromolecular crystal structures

(2011) Garib N. Murshudov et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Automatic rebuilding and optimization of crystallographic structures in the Protein Data Bank

(2011) R. P. Joosten et al.   BIOINFORMATICS

X-ray crystallography: assessment and validation of protein–small molecule complexes for drug discovery

(2011) David R Cooper et al.   Expert Opinion on Drug Discovery

Combinatorial readout of histone H3 modifications specifies localization of ATRX to heterochromatin

(2011) Sebastian Eustermann et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Structural basis of pre-let-7 miRNA recognition by the zinc knuckles of pluripotency factor Lin28

(2011) Fionna E Loughlin et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Structural and functional analysis of the archaeal endonuclease Nob1

(2011) Thomas Veith et al.   NUCLEIC ACIDS RESEARCH

MetalDetector v2.0: predicting the geometry of metal binding sites from protein sequence

(2011) Andrea Passerini et al.   NUCLEIC ACIDS RESEARCH

Autoinhibition and phosphorylation-induced activation mechanisms of human cancer and autoimmune disease-related E3 protein Cbl-b

(2011) Y. Kobashigawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

How different oxidation states of crystalline myoglobin are influenced by X-rays

(2010) Hans-Petter Hersleth et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Unmet challenges of structural genomics

(2010) Maksymilian Chruszcz et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Jmol– a paradigm shift in crystallographic visualization

(2010) Robert M. Hanson   JOURNAL OF APPLIED CRYSTALLOGRAPHY

Computational investigation of the histidine ammonia-lyase reaction: a modified loop conformation and the role of the zinc(II) ion

(2010) Amalia-Laura Seff et al.   JOURNAL OF MOLECULAR MODELING

FINDSITE-metal: Integrating evolutionary information and machine learning for structure-based metal-binding site prediction at the proteome level

(2010) Michal Brylinski et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Crystal Structure of the  -Kinase Domain of Dictyostelium Myosin Heavy Chain Kinase A

(2010) Q. Ye et al.   Science Signaling

Metals in protein structures: a review of their principal features

(2010) Marjorie M. Harding et al.   Crystallography Reviews

MolProbity: all-atom structure validation for macromolecular crystallography

(2009) Vincent B. Chen et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Copper Binding to β-2-Microglobulin and Its Pre-Amyloid Oligomers

(2009) Rapole Srikanth et al.   BIOCHEMISTRY

Metal-MACiE: a database of metals involved in biological catalysis

(2009) Claudia Andreini et al.   BIOINFORMATICS

ESG: extended similarity group method for automated protein function prediction

(2009) Meghana Chitale et al.   BIOINFORMATICS

Recent Developments in the Methods and Applications of the Bond Valence Model

(2009) Ian David Brown   CHEMICAL REVIEWS

MIPS: metal interactions in protein structures

(2009) K. Hemavathi et al.   JOURNAL OF APPLIED CRYSTALLOGRAPHY

Structural and Functional Characterization of Plant Aminoaldehyde Dehydrogenase from Pisum sativum with a Broad Specificity for Natural and Synthetic Aminoaldehydes

(2009) Martina Tylichová et al.   JOURNAL OF MOLECULAR BIOLOGY

Factors Governing Metal−Ligand Distances and Coordination Geometries of Metal Complexes

(2009) Gopi Kuppuraj et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Biological X-ray absorption spectroscopy and metalloproteomics

(2009) Isabella Ascone et al.   JOURNAL OF SYNCHROTRON RADIATION

MSDmotif: exploring protein sites and motifs

(2008) Adel Golovin et al.   BMC BIOINFORMATICS

MESPEUS: a database of the geometry of metal sites in proteins

(2008) K. Hsin et al.   JOURNAL OF APPLIED CRYSTALLOGRAPHY

Data mining of metal ion environments present in protein structures

(2008) Heping Zheng et al.   JOURNAL OF INORGANIC BIOCHEMISTRY

PDBsum new things

(2008) R. A. Laskowski   NUCLEIC ACIDS RESEARCH

Prediction of 3D metal binding sites from translated gene sequences based on remote-homology templates

(2008) Ronen Levy et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS