Base-resolution methylation patterns accurately predict transcription factor bindings in vivo
出版年份 2015 全文链接
标题
Base-resolution methylation patterns accurately predict transcription factor bindings in vivo
作者
关键词
-
出版物
NUCLEIC ACIDS RESEARCH
Volume 43, Issue 5, Pages 2757-2766
出版商
Oxford University Press (OUP)
发表日期
2015-02-27
DOI
10.1093/nar/gkv151
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Function and information content of DNA methylation
- (2015) Dirk Schübeler NATURE
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Transgenerational Epigenetic Inheritance: Myths and Mechanisms
- (2014) Edith Heard et al. CELL
- A Bayesian hierarchical model to detect differentially methylated loci from single nucleotide resolution sequencing data
- (2014) Hao Feng et al. NUCLEIC ACIDS RESEARCH
- Genome-wide Profiling of 5-Formylcytosine Reveals Its Roles in Epigenetic Priming
- (2013) Chun-Xiao Song et al. CELL
- Distribution, recognition and regulation of non-CpG methylation in the adult mammalian brain
- (2013) Junjie U Guo et al. NATURE NEUROSCIENCE
- JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles
- (2013) Anthony Mathelier et al. NUCLEIC ACIDS RESEARCH
- Differential principal component analysis of ChIP-seq
- (2013) H. Ji et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Global Epigenomic Reconfiguration During Mammalian Brain Development
- (2013) R. Lister et al. SCIENCE
- RFECS: A Random-Forest Based Algorithm for Enhancer Identification from Chromatin State
- (2013) Nisha Rajagopal et al. PLoS Computational Biology
- DNA methylation presents distinct binding sites for human transcription factors
- (2013) Shaohui Hu et al. eLife
- Base-Resolution Analysis of 5-Hydroxymethylcytosine in the Mammalian Genome
- (2012) Miao Yu et al. CELL
- Sequence and chromatin determinants of cell-type-specific transcription factor binding
- (2012) A. Arvey et al. GENOME RESEARCH
- Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
- (2012) J. Wang et al. GENOME RESEARCH
- Functions of DNA methylation: islands, start sites, gene bodies and beyond
- (2012) Peter A. Jones NATURE REVIEWS GENETICS
- Epigenetic priors for identifying active transcription factor binding sites
- (2011) Gabriel Cuellar-Partida et al. BIOINFORMATICS
- Comprehensive Genome-wide Protein-DNA Interactions Detected at Single-Nucleotide Resolution
- (2011) Ho Sung Rhee et al. CELL
- Epigenetic modifications in cancer
- (2011) R Kanwal et al. CLINICAL GENETICS
- Genome-wide histone acetylation data improve prediction of mammalian transcription factor binding sites
- (2010) Stephen A. Ramsey et al. BIOINFORMATICS
- HPeak: an HMM-based algorithm for defining read-enriched regions in ChIP-Seq data
- (2010) Zhaohui S Qin et al. BMC BIOINFORMATICS
- Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data
- (2010) R. Pique-Regi et al. GENOME RESEARCH
- Nucleosome dynamics define transcriptional enhancers
- (2010) Housheng Hansen He et al. NATURE GENETICS
- Genome-wide prediction of transcription factor binding sites using an integrated model
- (2010) Kyoung-Jae Won et al. GENOME BIOLOGY
- Unlocking the secrets of the genome
- (2009) Susan E. Celniker et al. NATURE
- Human DNA methylomes at base resolution show widespread epigenomic differences
- (2009) Ryan Lister et al. NATURE
- Global mapping of protein-DNA interactions in vivo by digital genomic footprinting
- (2009) Jay R Hesselberth et al. NATURE METHODS
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
- (2008) Ryan Lister et al. CELL
- DNA methylation landscapes: provocative insights from epigenomics
- (2008) Miho M. Suzuki et al. NATURE REVIEWS GENETICS
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