FSL J1-208, a Virulent Uncommon Phylogenetic Lineage IV Listeria monocytogenes Strain with a Small Chromosome Size and a Putative Virulence Plasmid Carrying Internalin-Like Genes

Molecular and Phenotypic Characterization of Listeria monocytogenes from U.S. Department of Agriculture Food Safety and Inspection Service Surveillance of Ready-to-Eat Foods and Processing Facilities

(2016) TODD J. WARD et al.   JOURNAL OF FOOD PROTECTION

Genome Sequence of Lineage III Listeria monocytogenes Strain HCC23

(2011) C. L. Steele et al.   JOURNAL OF BACTERIOLOGY

A Population Genetics-Based and Phylogenetic Approach to Understanding the Evolution of Virulence in the Genus Listeria

(2010) H. C. den Bakker et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Listeria monocytogenes  B Has a Small Core Regulon and a Conserved Role in Virulence but Makes Differential Contributions to Stress Tolerance across a Diverse Collection of Strains

(2010) H. F. Oliver et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss

(2010) Henk C den Bakker et al.   BMC GENOMICS

Homopolymeric tracts represent a general regulatory mechanism in prokaryotes

(2010) Renato H Orsi et al.   BMC GENOMICS

Correlations Between Bacterial Ecology and Mobile DNA

(2010) Irene L. G. Newton et al.   CURRENT MICROBIOLOGY

What traits are carried on mobile genetic elements and why?

(2010) D J Rankin et al.   HEREDITY

Complete Genome Sequence of Listeria seeligeri, a Nonpathogenic Member of the Genus Listeria

(2010) C. Steinweg et al.   JOURNAL OF BACTERIOLOGY

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations

(2010) Federico Abascal et al.   NUCLEIC ACIDS RESEARCH

Conjugative Botulinum Neurotoxin-Encoding Plasmids in Clostridium botulinum

(2010) Kristin M. Marshall et al.   PLoS One

Comparative Analysis of Plasmids in the Genus Listeria

(2010) Carsten Kuenne et al.   PLoS One

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

IslandViewer: an integrated interface for computational identification and visualization of genomic islands

(2009) M. G. I. Langille et al.   BIOINFORMATICS

Short-term genome evolution of Listeria monocytogenes in a non-controlled environment

(2009) Renato H Orsi et al.   BMC GENOMICS

Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors

(2009) P. H. Degnan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multilocus Genotyping Assays for Single Nucleotide Polymorphism-Based Subtyping of Listeria monocytogenes Isolates

(2008) T. J. Ward et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Prophinder: a computational tool for prophage prediction in prokaryotic genomes

(2008) Gipsi Lima-Mendez et al.   BIOINFORMATICS

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Recent developments in the MAFFT multiple sequence alignment program

(2008) K. Katoh et al.   BRIEFINGS IN BIOINFORMATICS

Genomics of lactic acid bacteria

(2008) Joel Schroeter et al.   FEMS MICROBIOLOGY LETTERS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION