Understanding the role of domain–domain linkers in the spatial orientation of domains in multi-domain proteins

Effects of DNA Binding of the Zinc Finger and Linkers for Domain Fusion on the Catalytic Activity of Sequence-Specific Chimeric Recombinases Determined by a Facile Fluorescent System

(2012) Wataru Nomura et al.   BIOCHEMISTRY

Combined bottom-up and top-down mass spectrometry analyses of the pattern of post-translational modifications of Drosophila melanogaster linker histone H1

(2012) Carles Bonet-Costa et al.   Journal of Proteomics

The Protein Data Bank at 40: Reflecting on the Past to Prepare for the Future

(2012) Helen M. Berman et al.   STRUCTURE

Corresponding Functional Dynamics across the Hsp90 Chaperone Family: Insights from a Multiscale Analysis of MD Simulations

(2012) Giulia Morra et al.   PLoS Computational Biology

Regulation of the susceptibility of HIV-1 to a neutralizing antibody KD-247 by nonepitope mutations distant from its epitope

(2011) Mari Takizawa et al.   AIDS

A graphical interface for the FoldX forcefield

(2011) J. Van Durme et al.   BIOINFORMATICS

DoBo: Protein domain boundary prediction by integrating evolutionary signals and machine learning

(2011) Jesse Eickholt et al.   BMC BIOINFORMATICS

iPBA: a tool for protein structure comparison using sequence alignment strategies

(2011) Jean-Christophe Gelly et al.   NUCLEIC ACIDS RESEARCH

Reorganizing the protein space at the Universal Protein Resource (UniProt)

(2011)   NUCLEIC ACIDS RESEARCH

An Improved Profile-Level Domain Linker Propensity Index for Protein Domain Boundary Prediction.

(2011) Yanfeng Zhang et al.   PROTEIN AND PEPTIDE LETTERS

Stability of domain structures in multi-domain proteins

(2011) Ramachandra M. Bhaskara et al.   Scientific Reports

DomSVR: domain boundary prediction with support vector regression from sequence information alone

(2010) Peng Chen et al.   AMINO ACIDS

iAlign: a method for the structural comparison of protein–protein interfaces

(2010) Mu Gao et al.   BIOINFORMATICS

Advances and pitfalls of protein structural alignment

(2009) Hitomi Hasegawa et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Impact of linker strain and flexibility in the design of a fragment-based inhibitor

(2009) Suhman Chung et al.   Nature Chemical Biology

Structural basis for autoregulation of the zinc transporter YiiP

(2009) Min Lu et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Assessment of domain boundary predictions and the prediction of intramolecular contacts in CASP8

(2009) Iakes Ezkurdia et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Bimodal Recognition of DNA Geometry by Human Topoisomerase IIα: Preferential Relaxation of Positively Supercoiled DNA Requires Elements in the C-Terminal Domain†

(2008) A. Kathleen McClendon et al.   BIOCHEMISTRY

Loop-length-dependent SVM prediction of domain linkers for high-throughput structural proteomics

(2008) Teppei Ebina et al.   BIOPOLYMERS

Improved general regression network for protein domain boundary prediction

(2008) Paul D Yoo et al.   BMC BIOINFORMATICS

DomNet: Protein Domain Boundary Prediction Using Enhanced General Regression Network and New Profiles

(2008) Paul D. Yoo et al.   IEEE TRANSACTIONS ON NANOBIOSCIENCE

Analyzing the sequence–structure relationship of a library of local structural prototypes

(2008) Cristina Benros et al.   JOURNAL OF THEORETICAL BIOLOGY

Domain Hierarchy and closed Loops (DHcL): a server for exploring hierarchy of protein domain structure

(2008) Grzegorz Koczyk et al.   NUCLEIC ACIDS RESEARCH

Extension of a local backbone description using a structural alphabet: A new approach to the sequence-structure relationship

(2002) Alexandre G. de Brevern et al.   PROTEIN SCIENCE