Article
Cell Biology
Kohsuke Tsuchiya, Shoko Hosojima, Hideki Hara, Hiroko Kushiyama, Mamunur Rashid Mahib, Takeshi Kinoshita, Takashi Suda
Summary: This study demonstrates that GSDMD is essential for the rapid maturation of IL-1α by nonparticulate inflammasome activators. Ablation of GSDMD prevents the maturation of IL-1α but not IL-1β. The maturation of IL-1α induced by inflammasomes relies on extracellular calcium and calpains, which are induced in a GSDMD-dependent manner.
Article
Environmental Sciences
Ning Zhang, Ping Li, Hua Lin, Tian Shuo, Fen Ping, Li Su, Gang Chen
Summary: The study demonstrated that IL-10 has a protective effect against lung damage induced by PM2.5, reducing oxidative stress and apoptosis by activating the AMPK/SIRT1/PGC-1 alpha signaling pathway.
ENVIRONMENTAL TOXICOLOGY AND PHARMACOLOGY
(2021)
Article
Biochemistry & Molecular Biology
Xuguo Duan, Shuyue Luan
Summary: This study successfully expressed the natural intracellular beta-galactosidase (lacZBa) from Bacillus aryabhattai extracellularly in Bacillus subtilis, achieving high yield in secretion. The expression of lacZBa in B. subtilis showed improved acid resistance, pH stability, and thermostability compared to E. coli. The optimal medium composition was determined using single-factor experiments and response surface methodology, resulting in significantly enhanced extracellular expression of beta-galactosidase.
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES
(2023)
Article
Cell Biology
Sahana Shankar, Zi-Ting Hsu, Artur Ezquerra, Chien-Chien Li, Tzu-Lun Huang, Etienne Coyaud, Ricardo Viais, Cedric Grauffel, Brian Raught, Carmay Lim, Jens Luders, Su-Yi Tsai, Kuo-Chiang Hsia
Summary: This study reveals a y-tubulin ring complex (y-TuRC)-dependent pathway that promotes cilia disassembly and prevents cilia formation. It is further demonstrated that Kif2A is recruited to the cilium basal body in a y-TuRC-dependent manner. These findings illustrate the important role of y-TuRC in ciliogenesis.
Article
Plant Sciences
Xi Huang, Hang Yu, Cong Xie, Yao-Long Zhou, Meng-Meng Chen, Han-Lin Shi, Wei-Feng Tang, Jing-Cheng Dong, Qing-Li Luo
Summary: LKZP improves lung function and airway inflammation in asthma by modulating the IL-33/ST2-NF-kappa B/GSK3 β/mTOR signaling pathway, reducing mucus secretion and correcting immune imbalance.
PHARMACEUTICAL BIOLOGY
(2022)
Article
Biochemistry & Molecular Biology
Henrietta Vadaszi, Bence Kiss, Andras Micsonai, Gitta Schlosser, Tamas Szaniszlo, Reka A. Kovacs, Balazs A. Gyoerffy, Katalin A. Kekesi, Yuji Goto, Barbara Uzonyi, Karoly Liliom, Jozsef Kardos
Summary: C1q, a complement component, plays a role in synapse elimination in the central nervous system. However, the molecular mechanism of C1q-associated synapse phagocytosis is still unclear. This study designed single-chain proteins that can inhibit the function of C1q and validated their structure and binding capabilities. These findings can contribute to understanding the localization and functions of C1q in neurons and developing inhibitors for therapeutic purposes.
JOURNAL OF BIOLOGICAL CHEMISTRY
(2022)
Article
Immunology
Marloes A. H. M. Michels, Nicole C. A. J. van de Kar, Sanne A. W. van Kraaij, Sebastian A. Sarlea, Valentina Gracchi, Flore A. P. T. Engels, Eiske M. Dorresteijn, Johannes van der Deure, Caroline Duineveld, Jack F. M. Wetzels, Lambertus P. W. J. van den Heuvel, Elena B. Volokhina
Summary: The study investigated the activity of the classical pathway convertase in patients with C3G and IC-MPGN, revealing prolonged activity in some patients attributed to immunoglobulins and non-immunoglobulin factors. This finding provides new insights into the mechanisms of CP convertase overactivity in C3G/IC-MPGN.
FRONTIERS IN IMMUNOLOGY
(2021)
Article
Multidisciplinary Sciences
Grant R. Campbell, Rachel K. To, Jonathan Hanna, Stephen A. Spector
Summary: Studies have shown that GU-rich RNA derived from SARS-CoV-2, SARS-CoV-1, and HIV-1 can trigger a pro-inflammatory response in macrophages, with the induction of IL-1 beta through a non-classical pathway.
Review
Biochemistry & Molecular Biology
Kunyou Park, Sungeun Ju, Nari Kim, Seung-Yeol Park
Summary: The Golgi complex is crucial for protein secretion as it regulates cargo sorting and trafficking. Research efforts have focused on understanding the unique stack structure of the Golgi apparatus to unravel the mechanisms of protein secretion through this organelle. Recent insights have also shed light on the signaling pathways controlled by the Golgi complex and their physiological significance.
Article
Agriculture, Dairy & Animal Science
Guoyan Wang, Jun Zhang, Shengru Wu, Senlin Qin, Yining Zheng, Chao Xia, Huijun Geng, Junhu Yao, Lu Deng
Summary: Cattle have a unique mechanism for efficient hepatic gluconeogenesis, involving the high expression of specific genes and the activation of the mTORC1 signaling pathway. These findings are important for understanding the mechanism underlying the quantitative differences in hepatic gluconeogenesis efficiency between cattle and non-ruminant animals.
Article
Biochemistry & Molecular Biology
Fernando Valenzuela-Gomez, Ignacio Arechaga, Elena Cabezon
Summary: Bacterial conjugation is the main mechanism for the dissemination of antibiotic resistance genes. In this study, nanopore technology was used to investigate the unfolding states of the relaxase-DNA complex during translocation. The unfolding pathway of the relaxase depends on the tyrosine residue involved in conjugative DNA binding. This study provides new insights for applying nanopore sensing to study protein secretion.
NUCLEIC ACIDS RESEARCH
(2023)
Article
Biology
Ankith Sharma, Rajdeep Chowdhury, Siegfried M. Musser
Summary: A single molecule photobleaching analysis reveals that the Tat receptor complex is a tetramer with equal stoichiometry of TatB and TatC in its native membrane environment. This finding provides insights into the structure and function of the receptor complex.
COMMUNICATIONS BIOLOGY
(2022)
Article
Allergy
Yinghong Sun, Tian Xia, Jingfang Ma, Yunxiao Sun
Summary: The role and mechanism of Runx3 in the development of asthma were investigated in this study. Results showed that Runx3 ameliorated IL-12-induced BEAS-2B cell injury by inhibiting the HIF-1α/NLRP3 pathway, providing a novel strategy for asthma therapy.
INTERNATIONAL ARCHIVES OF ALLERGY AND IMMUNOLOGY
(2022)
Article
Biochemistry & Molecular Biology
Zhihao Wang, Biao Li, Haiyan Jiang, Yuchen Ma, Yanni Bao, Xiangyu Zhu, Hongguang Xia, Yong Jin
Summary: Alcoholic fatty liver disease (AFLD) is liver damage caused by chronic heavy drinking, with IL-8 potentially playing a role in its pathogenesis. Studies have shown that hIL-8 exacerbates alcohol-induced fatty liver disease in mice through the Akt/HIF-1 alpha pathway, highlighting a potential target for clinical treatment.
Article
Chemistry, Multidisciplinary
Naupada Preeyanka, Amit Akhuli, Himani Dey, Debabrata Chakraborty, Abdur Rahaman, Moloy Sarkar
Summary: This study provides experimental evidence that the interaction between nanoparticles and proteins can proceed through a pathway different from the classical protein corona or protein complex.
Article
Chemistry, Analytical
Krishna Mohan Sepuru, Junji Iwahara, Krishna Rajarathnam
Article
Multidisciplinary Sciences
Valerie J. Klema, Krishna Mohan Sepuru, Nadia Fullbrunn, Tierra R. Farris, Paige S. Dunphy, Jere W. McBride, Krishna Rajarathnam, Kyung H. Choi
Article
Medicine, Research & Experimental
Beth M. French, Selin Sendil, Krishna Mohan Sepuru, Jolene Ranek, Lars Burdorf, Donald Harris, Emily Redding, Xiangfei Cheng, Christopher T. Laird, Yuming Zhao, Benjamin Cerel, Krishna Rajarathnam, Richard N. Pierson, Agnes M. Azimzadeh
XENOTRANSPLANTATION
(2018)
Article
Biochemistry & Molecular Biology
Krishna Mohan Sepuru, Krishna Rajarathnam
Article
Biochemistry & Molecular Biology
Krishna Mohan Sepuru, Balaji Nagarajan, Umesh R. Desai, Krishna Rajarathnam
JOURNAL OF BIOLOGICAL CHEMISTRY
(2018)
Article
Biochemistry & Molecular Biology
Jignesh G. Patel, Hema P. Narra, Krishna Mohan Sepuru, Abha Sahni, Sandhya R. Golla, Aishwarya Sahni, Amber Singh, Casey L. C. Schroeder, Imran H. Chowdhury, Vsevolod L. Popov, Sanjeev K. Sahni
BIOLOGICAL CHEMISTRY
(2020)
Article
Biochemistry & Molecular Biology
Krishna Mohan Sepuru, Krishna Rajarathnam
JOURNAL OF BIOLOGICAL CHEMISTRY
(2019)
Article
Pediatrics
John I. Coon, Sangeeta Jain, Krishna M. Sepuru, Yerin Chung, Krishnan Mohankumar, Krishna Rajarathnam, Sunil K. Jain
PEDIATRIC RESEARCH
(2020)
Article
Cell Biology
Kirti Sawant, Krishna Mohan Sepuru, Emily Lowry, Brigith Penaranda, Charles W. Frevert, Roberto P. Garofalo, Krishna Rajarathnam
Summary: Chemokines Cxcl1 and Cxcl2 play a crucial role in recruiting neutrophils to combat microbial infection, with their activity influenced by G protein and other receptors. Cxcl2 variants are more potent in recruiting neutrophils in the peritoneum compared to Cxcl1 variants.
JOURNAL OF LEUKOCYTE BIOLOGY
(2021)
Article
Biochemistry & Molecular Biology
Krishna Mohan Sepuru, Krishna Rajarathnam
Summary: Chemokines Cxcl1 and Cxcl2 play crucial roles in neutrophil migration, with their recruitment activity regulated by GAGs; Cxcl1 and Cxcl2 can form heterodimers, exhibiting different binding characteristics to free and immobilized GAGs, as well as from homodimers, regulating chemokine function.
BIOCHEMICAL JOURNAL
(2021)
Article
Multidisciplinary Sciences
Krishna Mohan Sepuru, Vinay Nair, Priyanka Prakash, Alemayehu A. Gorfe, Krishna Rajarathnam
Article
Multidisciplinary Sciences
Hyemin Seo, Krishna Mohan Sepuru, Aarthi Putarjunan, Lyndsey Aguirre, Benjamin A. Burrows, Keiko U. Torii
Summary: Multicellular organisms develop specialized cell types to achieve complex functions of tissues and organs. Plant stomata differentiation is governed by sequential actions of specific bHLH proteins (SPCH, MUTE, and FAMA). The study reveals the important role of the SCRM C-terminal ACTL domain in heterodimerization selectivity.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2022)
Article
Biochemistry & Molecular Biology
Hema P. Narra, Abha Sahni, Krishna Mohan Sepuru, Jessica Alsing, Sanjeev K. Sahni
Summary: This study identified a putative diguanylate cyclase PleD in the genomes of pathogenic rickettsiae, responsible for the synthesis of c-di-GMP. It was found that levels of pleD changed dynamically after infection with R. rickettsii (Sheila Smith) in vitro, while there was no such change with R. rickettsii (Iowa). These findings provide the first evidence for the potentially important role(s) of c-di-GMP in host-cell responses to pathogenic rickettsiae.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Article
Biochemistry & Molecular Biology
Sarah Thompson, Chong Yun Pang, Krishna Mohan Sepuru, Seppe Cambier, Thomas P. Hellyer, Jonathan Scott, A. John Simpson, Paul Proost, John A. Kirby, Krishna Rajarathnam, Neil S. Sheerin, Simi Ali
Summary: Chemokine CXCL8 plays a crucial role in human immune response by mediating neutrophil migration and activation at sites of infection and injury. This study demonstrates that peroxynitrite can nitrate CXCL8, leading to impaired neutrophil migration and activation. The nitrated chemokine showed reduced ability to induce neutrophil migration in vitro and failed to promote leukocyte recruitment in vivo due to impaired receptor signaling and binding to glycosaminoglycans. The presence of nitrated CXCL8 was detected in bronchoalveolar lavage samples from patients with pneumonia, providing the first direct evidence of chemokine nitration in human pathophysiology.
CELLULAR AND MOLECULAR LIFE SCIENCES
(2023)
Article
Plant Sciences
Eun-Deok Kim, Michael W. Dorrity, Bridget A. Fitzgerald, Hyemin Seo, Krishna Mohan Sepuru, Christine Queitsch, Nobutaka Mitsuda, Soon-Ki Han, Keiko U. Torii
Summary: This study presents an atlas of dynamic chromatin landscapes during stomatal cell-lineage progression, revealing the regulatory relationships between chromatin architecture, transcription factors, and cell-fate specification. The findings shed light on the mechanism by which specific heterotypic TF complexes recruit chromatin modifiers via key co-cis regulatory elements to facilitate cell-fate commitment.