Bacterial protein networks: properties and functions

The bacterial flagellar motor and its structural diversity

(2015) Tohru Minamino et al.   TRENDS IN MICROBIOLOGY

Quantifying Absolute Protein Synthesis Rates Reveals Principles Underlying Allocation of Cellular Resources

(2014) Gene-Wei Li et al.   CELL

To divide or not to divide: control of the bacterial cell cycle by environmental cues

(2014) Kristina Jonas   CURRENT OPINION IN MICROBIOLOGY

Assembly and stoichiometry of FliF and FlhA inSalmonellaflagellar basal body

(2014) Yusuke V. Morimoto et al.   MOLECULAR MICROBIOLOGY

MapZ marks the division sites and positions FtsZ rings in Streptococcus pneumoniae

(2014) Aurore Fleurie et al.   NATURE

Enzyme clustering accelerates processing of intermediates through metabolic channeling

(2014) Michele Castellana et al.   NATURE BIOTECHNOLOGY

The binary protein-protein interaction landscape of Escherichia coli

(2014) Seesandra V Rajagopala et al.   NATURE BIOTECHNOLOGY

Lipid-linked cell wall precursors regulate membrane association of bacterial actin MreB

(2014) Kathrin Schirner et al.   Nature Chemical Biology

How sisters grow apart: mycobacterial growth and division

(2014) Karen J. Kieser et al.   NATURE REVIEWS MICROBIOLOGY

A dynamically assembled cell wall synthesis machinery buffers cell growth

(2014) T. K. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cell cycle-dependent adaptor complex for ClpXP-mediated proteolysis directly integrates phosphorylation and second messenger signals

(2014) Stephen C. Smith et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rod-like bacterial shape is maintained by feedback between cell curvature and cytoskeletal localization

(2014) T. S. Ursell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Promoter architecture dictates cell-to-cell variability in gene expression

(2014) Daniel L. Jones et al.   SCIENCE

MurJ is the flippase of lipid-linked precursors for peptidoglycan biogenesis

(2014) L.-T. Sham et al.   SCIENCE

The actin homologue MreB organizes the bacterial cell membrane

(2014) Henrik Strahl et al.   Nature Communications

Architecture of the ring formed by the tubulin homologue FtsZ in bacterial cell division

(2014) Piotr Szwedziak et al.   eLife

The social fabric of the RNA degradosome

(2013) Katarzyna J. Bandyra et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Integrated Structural Analysis of the Human Nuclear Pore Complex Scaffold

(2013) Khanh Huy Bui et al.   CELL

Biogenesis of a Bacterial Organelle: The Carboxysome Assembly Pathway

(2013) Jeffrey C. Cameron et al.   CELL

Nucleotide Binding and Conformational Switching in the Hexameric Ring of a AAA+ Machine

(2013) Benjamin M. Stinson et al.   CELL

Building robust functionality in synthetic circuits using engineered feedback regulation

(2013) Susan Chen et al.   CURRENT OPINION IN BIOTECHNOLOGY

High-throughput approaches to understanding gene function and mapping network architecture in bacteria

(2013) Ana Rita Brochado et al.   CURRENT OPINION IN MICROBIOLOGY

Do the divisome and elongasome share a common evolutionary past?

(2013) Piotr Szwedziak et al.   CURRENT OPINION IN MICROBIOLOGY

Direct interaction of FtsZ and MreB is required for septum synthesis and cell division in Escherichia coli

(2013) Andrew K Fenton et al.   EMBO JOURNAL

Interaction of Proteins Associated with the Magnetosome Assembly in Magnetotactic Bacteria As Revealed by Two-Hybrid Two-Photon Excitation Fluorescence Lifetime Imaging Microscopy Förster Resonance Energy Transfer

(2013) Maria Antonietta Carillo et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Colocalization and interaction between elongasome and divisome during a preparative cell division phase inEscherichia coli

(2013) René van der Ploeg et al.   MOLECULAR MICROBIOLOGY

Mutations in cell elongation genesmreB,mrdAandmrdBsuppress the shape defect of RodZ-deficient cells

(2013) Daisuke Shiomi et al.   MOLECULAR MICROBIOLOGY

FtsEX is required for CwlO peptidoglycan hydrolase activity during cell wall elongation inBacillus subtilis

(2013) Jeffrey Meisner et al.   MOLECULAR MICROBIOLOGY

Trapping the dynamic acyl carrier protein in fatty acid biosynthesis

(2013) Chi Nguyen et al.   NATURE

The bacterial cell division proteins FtsA and FtsZ self-organize into dynamic cytoskeletal patterns

(2013) Martin Loose et al.   NATURE CELL BIOLOGY

Mapping the functional yeast ABC transporter interactome

(2013) Jamie Snider et al.   Nature Chemical Biology

A Y2H-seq approach defines the human protein methyltransferase interactome

(2013) Mareike Weimann et al.   NATURE METHODS

The CRAPome: a contaminant repository for affinity purification–mass spectrometry data

(2013) Dattatreya Mellacheruvu et al.   NATURE METHODS

How to get (a)round: mechanisms controlling growth and division of coccoid bacteria

(2013) Mariana G. Pinho et al.   NATURE REVIEWS MICROBIOLOGY

Liposome division by a simple bacterial division machinery

(2013) M. Osawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic Determinants and Cellular Constraints in Noisy Gene Expression

(2013) A. Sanchez et al.   SCIENCE

A Versatile Class of Cell Surface Directional Motors Gives Rise to Gliding Motility and Sporulation in Myxococcus xanthus

(2013) Morgane Wartel et al.   PLOS BIOLOGY

Genome-scale Co-evolutionary Inference Identifies Functions and Clients of Bacterial Hsp90

(2013) Maximilian O. Press et al.   PLoS Genetics

A Moonlighting Enzyme Links Escherichia coli Cell Size with Central Metabolism

(2013) Norbert S. Hill et al.   PLoS Genetics

A Census of Human Soluble Protein Complexes

(2012) Pierre C. Havugimana et al.   CELL

FtsA forms actin-like protofilaments

(2012) Piotr Szwedziak et al.   EMBO JOURNAL

The bacterial two-hybrid system based on adenylate cyclase reconstitution in Escherichia coli

(2012) Aurélia Battesti et al.   METHODS

Hierarchical Modularity and the Evolution of Genetic Interactomes across Species

(2012) Colm J. Ryan et al.   MOLECULAR CELL

Physical map and dynamics of the chaperone network in Escherichia coli

(2012) Mohit Kumar et al.   MOLECULAR MICROBIOLOGY

Natural strategies for the spatial optimization of metabolism in synthetic biology

(2012) Christina M Agapakis et al.   Nature Chemical Biology

Signaling Noise Enhances Chemotactic Drift ofE. coli

(2012) Marlo Flores et al.   PHYSICAL REVIEW LETTERS

Intramolecular arrangement of sensor and regulator overcomes relaxed specificity in hybrid two-component systems

(2012) G. E. Townsend et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Control of cell division in Streptococcus pneumoniae by the conserved Ser/Thr protein kinase StkP

(2012) K. Beilharz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Polar growth in the Alphaproteobacterial order Rhizobiales

(2012) P. J. B. Brown et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chemotactic signaling via carbohydrate phosphotransferase systems inEscherichia coli

(2012) Silke Neumann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Thermal Robustness of Signaling in Bacterial Chemotaxis

(2011) Olga Oleksiuk et al.   CELL

Responding to chemical gradients: bacterial chemotaxis

(2011) Victor Sourjik et al.   CURRENT OPINION IN CELL BIOLOGY

Identification of FtsW as a transporter of lipid-linked cell wall precursors across the membrane

(2011) Tamimount Mohammadi et al.   EMBO JOURNAL

Robust Control of Nitrogen Assimilation by a Bifunctional Enzyme in E. coli

(2011) Yuval Hart et al.   MOLECULAR CELL

Direct Membrane Binding by Bacterial Actin MreB

(2011) Jeanne Salje et al.   MOLECULAR CELL

Regulatory Cohesion of Cell Cycle and Cell Differentiation through Interlinked Phosphorylation and Second Messenger Networks

(2011) Sören Abel et al.   MOLECULAR CELL

Assembly of the Caulobacter cell division machine

(2011) Erin D. Goley et al.   MOLECULAR MICROBIOLOGY

Assembly and stability of flagellar motor in Escherichia coli

(2011) Hui Li et al.   MOLECULAR MICROBIOLOGY

The bacterial actin MreB rotates, and rotation depends on cell-wall assembly

(2011) S. van Teeffelen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An ATP-binding cassette transporter-like complex governs cell-wall hydrolysis at the bacterial cytokinetic ring

(2011) D. C. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Processive Movement of MreB-Associated Cell Wall Biosynthetic Complexes in Bacteria

(2011) J. Dominguez-Escobar et al.   SCIENCE

Coupled, Circumferential Motions of the Cell Wall Synthesis Machinery and MreB Filaments in B. subtilis

(2011) E. C. Garner et al.   SCIENCE

The molecular origins of evolutionary innovations

(2011) Andreas Wagner   TRENDS IN GENETICS

TonB-Dependent Transporters: Regulation, Structure, and Function

(2010) Nicholas Noinaj et al.   Annual Review of Microbiology

Quantitative Genetic Interactions Reveal Biological Modularity

(2010) Pedro Beltrao et al.   CELL

Regulation of Peptidoglycan Synthesis by Outer-Membrane Proteins

(2010) Athanasios Typas et al.   CELL

Second Messenger-Mediated Adjustment of Bacterial Swimming Velocity

(2010) Alex Boehm et al.   CELL

Phenotypic Landscape of a Bacterial Cell

(2010) Robert J. Nichols et al.   CELL

Recent advances in charting protein–protein interaction: mass spectrometry-based approaches

(2010) Anne-Claude Gavin et al.   CURRENT OPINION IN BIOTECHNOLOGY

Two-component signaling circuit structure and properties

(2010) Mark Goulian   CURRENT OPINION IN MICROBIOLOGY

Bacterial chemoreceptors: providing enhanced features to two-component signaling

(2010) Gerald L Hazelbauer et al.   CURRENT OPINION IN MICROBIOLOGY

Bacterial actin MreB assembles in complex with cell shape protein RodZ

(2010) Fusinita van den Ent et al.   EMBO JOURNAL

Spatial organization in bacterial chemotaxis

(2010) Victor Sourjik et al.   EMBO JOURNAL

The c-di-GMP Binding Protein YcgR Controls Flagellar Motor Direction and Speed to Affect Chemotaxis by a “Backstop Brake” Mechanism

(2010) Koushik Paul et al.   MOLECULAR CELL

Direct interactions of early and late assembling division proteins in Escherichia coli cells resolved by FRET

(2010) Svetlana Alexeeva et al.   MOLECULAR MICROBIOLOGY

Positioning cell wall synthetic complexes by the bacterial morphogenetic proteins MreB and MreD

(2010) Courtney L. White et al.   MOLECULAR MICROBIOLOGY

A post-translational, c-di-GMP-dependent mechanism regulating flagellar motility

(2010) Xin Fang et al.   MOLECULAR MICROBIOLOGY

A modular gradient-sensing network for chemotaxis in Escherichia coli revealed by responses to time-varying stimuli

(2010) Thomas S Shimizu et al.   Molecular Systems Biology

Bacterial adaptation through distributed sensing of metabolic fluxes

(2010) Oliver Kotte et al.   Molecular Systems Biology

Functional roles for noise in genetic circuits

(2010) Avigdor Eldar et al.   NATURE

Partial functional redundancy of MreB isoforms, MreB, Mbl and MreBH, in cell morphogenesis ofBacillus subtilis

(2009) Yoshikazu Kawai et al.   MOLECULAR MICROBIOLOGY

Dynamic map of protein interactions in the Escherichia coli chemotaxis pathway

(2009) David Kentner et al.   Molecular Systems Biology

Evolution of biomolecular networks — lessons from metabolic and protein interactions

(2009) Takuji Yamada et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Benchmarking yeast two-hybrid systems using the interactions of bacterial motility proteins

(2009) Seesandra Venkatappa Rajagopala et al.   PROTEOMICS

Proteome Organization in a Genome-Reduced Bacterium

(2009) S. Kuhner et al.   SCIENCE

Stochasticity in Protein Levels Drives Colinearity of Gene Order in Metabolic Operons of Escherichia coli

(2009) Károly Kovács et al.   PLOS BIOLOGY

Global Functional Atlas of Escherichia coli Encompassing Previously Uncharacterized Proteins

(2009) Pingzhao Hu et al.   PLOS BIOLOGY

Role of Translational Coupling in Robustness of Bacterial Chemotaxis Pathway

(2009) Linda Løvdok et al.   PLOS BIOLOGY

A Protein Domain-Based Interactome Network for C. elegans Early Embryogenesis

(2008) Mike Boxem et al.   CELL

Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences

(2008) Arjun Raj et al.   CELL

Rewiring the Specificity of Two-Component Signal Transduction Systems

(2008) Jeffrey M. Skerker et al.   CELL

A Large Scale Analysis of Protein-Protein Interactions in the Nitrogen-fixing Bacterium Mesorhizobium loti

(2008) Y. Shimoda et al.   DNA RESEARCH

The bacterial flagellar switch complex is getting more complex

(2008) Galit N Cohen-Ben-Lulu et al.   EMBO JOURNAL

RodZ (YfgA) is required for proper assembly of the MreB actin cytoskeleton and cell shape in E. coli

(2008) Felipe O Bendezú et al.   EMBO JOURNAL

The Binary Protein Interactome of Treponema pallidum – The Syphilis Spirochete

(2008) Björn Titz et al.   PLoS One

Protein exchange dynamics at chemoreceptor clusters in Escherichia coli

(2008) S. Schulmeister et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Relationship between cellular response and behavioral variability in bacterial chemotaxis

(2008) T. Emonet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-Quality Binary Protein Interaction Map of the Yeast Interactome Network

(2008) H. Yu et al.   SCIENCE

Conservation and Rewiring of Functional Modules Revealed by an Epistasis Map in Fission Yeast

(2008) A. Roguev et al.   SCIENCE