Multi-omic data analysis using Galaxy

High resolution mass spectrometry based techniques at the crossroads of metabolic pathways

(2013) Christophe Junot et al.   MASS SPECTROMETRY REVIEWS

An Automated Proteogenomic Method Uses Mass Spectrometry to Reveal Novel Genes inZea mays

(2013) Natalie E. Castellana et al.   MOLECULAR & CELLULAR PROTEOMICS

Transcriptome and genome sequencing uncovers functional variation in humans

(2013) Tuuli Lappalainen et al.   NATURE

Quantitative and Qualitative Proteome Characteristics Extracted from In-Depth Integrated Genomics and Proteomics Analysis

(2013) Teck Yew Low et al.   Cell Reports

Tavaxy: Integrating Taverna and Galaxy workflows with cloud computing support

(2012) Mohamed Abouelhoda et al.   BMC BIOINFORMATICS

Microbiology and proteomics, getting the best of both worlds!

(2012) Jean Armengaud   ENVIRONMENTAL MICROBIOLOGY

WS-PGRADE/gUSE Generic DCI Gateway Framework for a Large Variety of User Communities

(2012) Peter Kacsuk et al.   Journal of Grid Computing

Extending KNIME for next-generation sequencing data analysis

(2011) Bernd Jagla et al.   BIOINFORMATICS

Ketones and lactate increase cancer cell “stemness,” driving recurrence, metastasis and poor clinical outcome in breast cancer

(2011) Ubaldo E. Martinez-Outschoorn et al.   CELL CYCLE

Messy biology and the origins of evolutionary innovations

(2010) Dan S Tawfik   Nature Chemical Biology

myExperiment: a repository and social network for the sharing of bioinformatics workflows

(2010) Carole A. Goble et al.   NUCLEIC ACIDS RESEARCH

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY