Following the terrestrial tracks of Caulobacter - redefining the ecology of a reputed aquatic oligotroph

HTSSIP: An R package for analysis of high throughput sequencing data from nucleic acid stable isotope probing (SIP) experiments

(2018) Nicholas D. Youngblut et al.   PLoS One

Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly

(2018) Kateryna Zhalnina et al.   Nature Microbiology

Biogeography and organic matter removal shape long-term effects of timber harvesting on forest soil microbial communities

(2017) Roland C Wilhelm et al.   ISME Journal

Stalk formation of Brevundimonas and how it compares to Caulobacter crescentus

(2017) Patrick D. Curtis   PLoS One

Genomics and taxonomy in diagnostics for food security: soft-rotting enterobacterial plant pathogens

(2016) Leighton Pritchard et al.   Analytical Methods

Characterisation of a novel thermostable endoglucanase from Alicyclobacillus vulcanalis of potential application in bioethanol production

(2015) Angela Boyce et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering

(2015) Tal Galili   BIOINFORMATICS

Two decades of warming increases diversity of a potentially lignolytic bacterial community

(2015) Grace Pold et al.   Frontiers in Microbiology

OmpW of Caulobacter crescentus Functions as an Outer Membrane Channel for Cations

(2015) Roland Benz et al.   PLoS One

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

A Constant Size Extension Drives Bacterial Cell Size Homeostasis

(2014) Manuel Campos et al.   CELL

Implications of streamlining theory for microbial ecology

(2014) Stephen J Giovannoni et al.   ISME Journal

Extracellular gluco-oligosaccharide degradation by Caulobacter crescentus

(2014) G. N. Presley et al.   MICROBIOLOGY-SGM

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Multisubstrate Isotope Labeling and Metagenomic Analysis of Active Soil Bacterial Communities

(2014) Y. Verastegui et al.   mBio

A Cell Cycle and Nutritional Checkpoint Controlling Bacterial Surface Adhesion

(2014) Aretha Fiebig et al.   PLoS Genetics

Isolation of a Substantial Proportion of Forest Soil Bacterial Communities Detected via Pyrotag Sequencing

(2013) David VanInsberghe et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

GET_HOMOLOGUES, a Versatile Software Package for Scalable and Robust Microbial Pangenome Analysis

(2013) Bruno Contreras-Moreira et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Cellulose degradation by one mesophilic strain Caulobacter sp. FMC1 under both aerobic and anaerobic conditions

(2013) Na Song et al.   BIORESOURCE TECHNOLOGY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Characterization of a Broad-Specificity β-Glucanase Acting on β-(1,3)-, β-(1,4)-, and β-(1,6)-Glucans That Defines a New Glycoside Hydrolase Family

(2012) Mickael Lafond et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metagenomic Analysis of the Bioremediation of Diesel-Contaminated Canadian High Arctic Soils

(2012) Etienne Yergeau et al.   PLoS One

Identification and Targeted Cultivation of Abundant Novel Freshwater Sphingomonads and Analysis of Their Population Substructure

(2011) Mareike Jogler et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Betaproteobacteria dominance and diversity shifts in the bacterial community of a PAH-contaminated soil exposed to phenanthrene

(2011) Florence Martin et al.   ENVIRONMENTAL POLLUTION

The complex logic of stringent response regulation in Caulobacter crescentus: starvation signalling in an oligotrophic environment

(2011) Cara C. Boutte et al.   MOLECULAR MICROBIOLOGY

Surface contact stimulates the just-in-time deployment of bacterial adhesins

(2011) Guanglai Li et al.   MOLECULAR MICROBIOLOGY

IMG: the integrated microbial genomes database and comparative analysis system

(2011) V. M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

Characterization of Trapped Lignin-Degrading Microbes in Tropical Forest Soil

(2011) Kristen M. DeAngelis et al.   PLoS One

Stimulation of Lignocellulosic Biomass Hydrolysis by Proteins of Glycoside Hydrolase Family 61: Structure and Function of a Large, Enigmatic Family

(2010) Paul V. Harris et al.   BIOCHEMISTRY

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Kinetic characterization of a glycoside hydrolase family 44 xyloglucanase/endoglucanase from Ruminococcus flavefaciens FD-1

(2010) Christopher D. Warner et al.   ENZYME AND MICROBIAL TECHNOLOGY

CrfA, a Small Noncoding RNA Regulator of Adaptation to Carbon Starvation in Caulobacter crescentus

(2010) S. G. Landt et al.   JOURNAL OF BACTERIOLOGY

Getting in the Loop: Regulation of Development in Caulobacter crescentus

(2010) P. D. Curtis et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Substrate specificity of family 5, 6, 7, 9, 12, and 45 endoglucanases

(2009) E. Vlasenko et al.   BIORESOURCE TECHNOLOGY

Impact of white-rot fungi on numbers and community composition of bacteria colonizing beech wood from forest soil

(2009) Larissa B. Folman et al.   FEMS MICROBIOLOGY ECOLOGY

Phylogenetic composition and properties of bacteria coexisting with the fungus Hypholoma fasciculare in decaying wood

(2009) Vendula Valášková et al.   ISME Journal

Mechanism of Cellulose Hydrolysis by Inverting GH8 Endoglucanases: A QM/MM Metadynamics Study

(2009) Luis Petersen et al.   JOURNAL OF PHYSICAL CHEMISTRY B

The genomic basis of trophic strategy in marine bacteria

(2009) F. M. Lauro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Colonization of overlaying water by bacteria from dry river sediments

(2008) Stefano Fazi et al.   ENVIRONMENTAL MICROBIOLOGY