Evidence for extensive gene flow and Thermotoga subpopulations in subsurface and marine environments

High virus-to-cell ratios indicate ongoing production of viruses in deep subsurface sediments

(2014) Tim Engelhardt et al.   ISME Journal

Bacterial transformation: distribution, shared mechanisms and divergent control

(2014) Calum Johnston et al.   NATURE REVIEWS MICROBIOLOGY

Explaining microbial genomic diversity in light of evolutionary ecology

(2014) Otto X. Cordero et al.   NATURE REVIEWS MICROBIOLOGY

Ordering microbial diversity into ecologically and genetically cohesive units

(2014) B. Jesse Shapiro et al.   TRENDS IN MICROBIOLOGY

The microbial communities in two apparently physically separated deep subsurface oil reservoirs show extensive DNA sequence similarities

(2013) Anna Lewin et al.   ENVIRONMENTAL MICROBIOLOGY

Metagenomics of Hydrocarbon Resource Environments Indicates Aerobic Taxa and Genes to be Unexpectedly Common

(2013) Dongshan An et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Gene expression in the deep biosphere

(2013) William D. Orsi et al.   NATURE

IMG 4 version of the integrated microbial genomes comparative analysis system

(2013) Victor M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

The controls on the composition of biodegraded oils in the deep subsurface – Part 3. The impact of microorganism distribution on petroleum geochemical gradients in biodegraded petroleum reservoirs

(2013) B. Bennett et al.   ORGANIC GEOCHEMISTRY

Pyrosequencing Reveals High-Temperature Cellulolytic Microbial Consortia in Great Boiling Spring after In Situ Lignocellulose Enrichment

(2013) Joseph P. Peacock et al.   PLoS One

Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment

(2013) Cindy J. Castelle et al.   Nature Communications

Biogeography of Persephonella in deep-sea hydrothermal vents of the Western Pacific

(2013) Sayaka Mino et al.   Frontiers in Microbiology

Quartet decomposition server: a platform for analyzing phylogenetic trees

(2012) Fenglou Mao et al.   BMC BIOINFORMATICS

Global distribution of microbial abundance and biomass in subseafloor sediment

(2012) J. Kallmeyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Viral Diversity Threshold for Adaptive Immunity in Prokaryotes

(2012) A. D. Weinberger et al.   mBio

Influence of the Drilling Mud Formulation Process on the Bacterial Communities in Thermogenic Natural Gas Wells of the Barnett Shale

(2011) Christopher G. Struchtemeyer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metagenomics of the subsurface Brazos-Trinity Basin (IODP site 1320): comparison with other sediment and pyrosequenced metagenomes

(2011) Jennifer F Biddle et al.   ISME Journal

Carbon and nitrogen assimilation in deep subseafloor microbial cells

(2011) Y. Morono et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deep subseafloor microbial cells on physiological standby

(2011) B. B. Jorgensen   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RDP3: a flexible and fast computer program for analyzing recombination

(2010) D. P. Martin et al.   BIOINFORMATICS

Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions

(2010) Chad Laing et al.   BMC BIOINFORMATICS

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Microbial Provinces in the Subseafloor

(2009) Matthew O. Schrenk et al.   Annual Review of Marine Science

Microbiology and geochemistry of great boiling and mud hot springs in the United States Great Basin

(2009) Kyle C. Costa et al.   EXTREMOPHILES

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Prokaryotic Populations and Activities in an Interbedded Coal Deposit, Including a Previously Deeply Buried Section (1.6–2.3 km) Above ∼ 150 Ma Basement Rock

(2009) John C. Fry et al.   GEOMICROBIOLOGY JOURNAL

Kosmotoga olearia gen. nov., sp. nov., a thermophilic, anaerobic heterotroph isolated from an oil production fluid

(2009) J. L. DiPippo et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY