Nutrients drive transcriptional changes that maintain metabolic homeostasis but alter genome architecture in Microcystis

Global Transcriptional Responses of the Toxic Cyanobacterium, Microcystis aeruginosa, to Nitrogen Stress, Phosphorus Stress, and Growth on Organic Matter

(2013) Matthew J. Harke et al.   PLoS One

A Tribute to Disorder in the Genome of the Bloom-Forming Freshwater Cyanobacterium Microcystis aeruginosa

(2013) Jean-François Humbert et al.   PLoS One

Metaproteomics Reveals Abundant Transposase Expression in Mutualistic Endosymbionts

(2013) M. Kleiner et al.   mBio

Homologues of bacterial TnpB_IS605 are widespread in diverse eukaryotic transposable elements

(2013) Weidong Bao et al.   Mobile DNA

Genome-derived insights into the biology of the hepatotoxic bloom-forming cyanobacterium Anabaena sp. strain 90

(2012) Hao Wang et al.   BMC GENOMICS

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

(2012) M.-A. Dillies et al.   BRIEFINGS IN BIOINFORMATICS

Metagenomic microbial community profiling using unique clade-specific marker genes

(2012) Nicola Segata et al.   NATURE METHODS

Cyanobacteria and Cyanotoxins: The Influence of Nitrogen versus Phosphorus

(2012) Andrew M. Dolman et al.   PLoS One

A bacterial genome in transition - an exceptional enrichment of IS elements but lack of evidence for recent transposition in the symbiont Amoebophilus asiaticus

(2011) Stephan Schmitz-Esser et al.   BMC EVOLUTIONARY BIOLOGY

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

(2011) Nabil-Fareed Alikhan et al.   BMC GENOMICS

Defining the Boundaries and Characterizing the Landscape of Functional Genome Expression in Vascular Tissues of Populus using Shotgun Proteomics

(2011) Paul Abraham et al.   JOURNAL OF PROTEOME RESEARCH

Comment: Lake 227 shows clearly that controlling inputs of nitrogen will not reduce or prevent eutrophication of lakes

(2011) M. J. Paterson et al.   LIMNOLOGY AND OCEANOGRAPHY

Comparative effects of urea, ammonium, and nitrate on phytoplankton abundance, community composition, and toxicity in hypereutrophic freshwaters

(2011) Derek B. Donald et al.   LIMNOLOGY AND OCEANOGRAPHY

Molecular Response of the Bloom-Forming Cyanobacterium, Microcystis aeruginosa, to Phosphorus Limitation

(2011) Matthew J. Harke et al.   MICROBIAL ECOLOGY

A Day in the Life of Microcystis aeruginosa Strain PCC 7806 as Revealed by a Transcriptomic Analysis

(2011) Cécile Straub et al.   PLoS One

Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics

(2011) C. J. Gobler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolomic Analysis and Visualization Engine for LC−MS Data

(2010) Eugene Melamud et al.   ANALYTICAL CHEMISTRY

Metabolomic Analysis via Reversed-Phase Ion-Pairing Liquid Chromatography Coupled to a Stand Alone Orbitrap Mass Spectrometer

(2010) Wenyun Lu et al.   ANALYTICAL CHEMISTRY

Effects of nitrogenous compounds and phosphorus on the growth of toxic and non-toxic strains of Microcystis during cyanobacterial blooms

(2010) TW Davis et al.   AQUATIC MICROBIAL ECOLOGY

Nutrient-regulated transcriptional responses in the brown tide-forming alga Aureococcus anophagefferens

(2010) Louie L. Wurch et al.   ENVIRONMENTAL MICROBIOLOGY

Genome-wide comparison of cyanobacterial transposable elements, potential genetic diversity indicators

(2010) Shen Lin et al.   GENE

Nitrogen fixation may not balance the nitrogen pool in lakes over timescales relevant to eutrophication management

(2010) J. Thad Scott et al.   LIMNOLOGY AND OCEANOGRAPHY

Controlling harmful cyanobacterial blooms in a hyper-eutrophic lake (Lake Taihu, China): The need for a dual nutrient (N & P) management strategy

(2010) Hans W. Paerl et al.   WATER RESEARCH

Short RNA half-lives in the slow-growing marine cyanobacterium Prochlorococcus

(2010) Claudia Steglich et al.   GENOME BIOLOGY

A method for enzyme quenching in microbial metabolome analysis successfully applied to gram-positive and gram-negative bacteria and yeast

(2009) Jana Spura et al.   ANALYTICAL BIOCHEMISTRY

Plasticity and Evolution of Aeruginosin Biosynthesis in Cyanobacteria

(2009) K. Ishida et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Lake Erie Microcystis: Relationship between microcystin production, dynamics of genotypes and environmental parameters in a large lake

(2009) Johanna M. Rinta-Kanto et al.   HARMFUL ALGAE

In situ transcriptomic analysis of the globally important keystone N2-fixing taxon Crocosphaera watsonii

(2009) Ian Hewson et al.   ISME Journal

Deep sequencing analysis of the Methanosarcina mazei Go1 transcriptome in response to nitrogen availability

(2009) D. Jager et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Highly plastic genome of Microcystis aeruginosa PCC 7806, a ubiquitous toxic freshwater cyanobacterium

(2008) Lionel Frangeul et al.   BMC GENOMICS

Eutrophication of U.S. Freshwaters: Analysis of Potential Economic Damages

(2008) Walter K. Dodds et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Spatial and temporal diversity of microcystins and microcystin-producing genotypes in Oneida Lake, NY

(2008) Amber M. Hotto et al.   HARMFUL ALGAE

Nontoxic Strains of Cyanobacteria Are the Result of Major Gene Deletion Events Induced by a Transposable Element

(2008) Guntram Christiansen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS