Reconstructing an ancestral genotype of two hexachlorocyclohexane-degrading Sphingobium species using metagenomic sequence data

Genome Sequence of Sphingobium indicum B90A, a Hexachlorocyclohexane-Degrading Bacterium

(2012) S. Anand et al.   JOURNAL OF BACTERIOLOGY

MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads

(2012) Toshiaki Namiki et al.   NUCLEIC ACIDS RESEARCH

Comparative Metagenomic Analysis of Soil Microbial Communities across Three Hexachlorocyclohexane Contamination Levels

(2012) Naseer Sangwan et al.   PLoS One

Soil Bacterial Diversity Screening Using Single 16S rRNA Gene V Regions Coupled with Multi-Million Read Generating Sequencing Technologies

(2012) Sotirios Vasileiadis et al.   PLoS One

Comparative Metagenomics of Toxic Freshwater Cyanobacteria Bloom Communities on Two Continents

(2012) Morgan M. Steffen et al.   PLoS One

Bambus 2: scaffolding metagenomes

(2011) Sergey Koren et al.   BIOINFORMATICS

ThelinGenes for γ-Hexachlorocyclohexane Degradation inSphingomonassp. MM-1 Proved to Be Dispersed across Multiple Plasmids

(2011) Michiro TABATA et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Bacterial species may exist, metagenomics reveal

(2011) Alejandro Caro-Quintero et al.   ENVIRONMENTAL MICROBIOLOGY

Genomic organization and genomic structural rearrangements of Sphingobium japonicum UT26, an archetypal γ-hexachlorocyclohexane-degrading bacterium

(2011) Yuji Nagata et al.   ENZYME AND MICROBIAL TECHNOLOGY

The Whole Genome Sequence of Sphingobium chlorophenolicum L-1: Insights into the Evolution of the Pentachlorophenol Degradation Pathway

(2011) Shelley D. Copley et al.   Genome Biology and Evolution

Complete Genome Sequence of Sphingobium sp. Strain SYK-6, a Degrader of Lignin-Derived Biaryls and Monoaryls

(2011) E. Masai et al.   JOURNAL OF BACTERIOLOGY

Selection in Coastal Synechococcus (Cyanobacteria) Populations Evaluated from Environmental Metagenomes

(2011) Vera Tai et al.   PLoS One

SeqTrim: a high-throughput pipeline for preprocessing any type of sequence reads

(2010) Juan Falgueras et al.   BMC BIOINFORMATICS

Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data

(2010) Petr Novák et al.   BMC BIOINFORMATICS

Evaluation of hexachlorocyclohexane contamination from the last lindane production plant operating in India

(2010) Simran Jit et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Complete Genome Sequence of the Representative  -Hexachlorocyclohexane-Degrading Bacterium Sphingobium japonicum UT26

(2010) Y. Nagata et al.   JOURNAL OF BACTERIOLOGY

Biochemistry of Microbial Degradation of Hexachlorocyclohexane and Prospects for Bioremediation

(2010) R. Lal et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Transposases are the most abundant, most ubiquitous genes in nature

(2010) Ramy K. Aziz et al.   NUCLEIC ACIDS RESEARCH

Murasaki: A Fast, Parallelizable Algorithm to Find Anchors from Multiple Genomes

(2010) Kris Popendorf et al.   PLoS One

Accurate identification of orthologous segments among multiple genomes

(2009) Tsuyoshi Hachiya et al.   BIOINFORMATICS

INTEGRALL: a database and search engine for integrons, integrases and gene cassettes

(2009) A. Moura et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH