Resolution of Brassicaceae Phylogeny Using Nuclear Genes Uncovers Nested Radiations and Supports Convergent Morphological Evolution

Dissecting Molecular Evolution in the Highly Diverse Plant Clade Caryophyllales Using Transcriptome Sequencing

(2015) Ya Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

A metacalibrated time-tree documents the early rise of flowering plant phylogenetic diversity

(2015) Susana Magallón et al.   NEW PHYTOLOGIST

A Time-Calibrated Road Map of Brassicaceae Species Radiation and Evolutionary History

(2015) Nora Hohmann et al.   PLANT CELL

The butterfly plant arms-race escalated by gene and genome duplications

(2015) Patrick P. Edger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular control of seasonal flowering in rice, arabidopsis and temperate cereals

(2014) Roshi Shrestha et al.   ANNALS OF BOTANY

ASTRAL: genome-scale coalescent-based species tree estimation

(2014) S. Mirarab et al.   BIOINFORMATICS

Functional innovations of three chronological mesohexaploid Brassica rapa genomes

(2014) Jungeun Kim et al.   BMC GENOMICS

TreSpEx–-Detection of Misleading Signal in Phylogenetic Reconstructions Based on Tree Information

(2014) Torsten H. Struck   Evolutionary Bioinformatics

The evolution of selfing from outcrossing ancestors in Brassicaceae: what have we learned from variation at theS-locus?

(2014) X. Vekemans et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Polyploid Evolution of the Brassicaceae during the Cenozoic Era

(2014) Sateesh Kagale et al.   PLANT CELL

Phylotranscriptomic analysis of the origin and early diversification of land plants

(2014) Norman J. Wickett et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times

(2014) Liping Zeng et al.   Nature Communications

Comparative transcriptome analysis of the metal hyperaccumulator Noccaea caerulescens

(2014) Pauliina Halimaa et al.   Frontiers in Plant Science

A world-wide perspective on crucifer speciation and evolution: phylogenetics, biogeography and trait evolution in tribe Arabideae

(2013) Robert Karl et al.   ANNALS OF BOTANY

Tolerance to cadmium in plants: the special case of hyperaccumulators

(2013) Nathalie Verbruggen et al.   BIOMETALS

The evolution of quantitative traits in complex environments

(2013) J T Anderson et al.   HEREDITY

An ecogenomic analysis of herbivore-induced plant volatiles inBrassica juncea

(2013) Vartika Mathur et al.   MOLECULAR ECOLOGY

Reprint of: Using nuclear gene data for plant phylogenetics: Progress and prospects

(2013) Elizabeth A. Zimmer et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions

(2013) Annabelle Haudry et al.   NATURE GENETICS

The Capsella rubella genome and the genomic consequences of rapid mating system evolution

(2013) Tanja Slotte et al.   NATURE GENETICS

BrassiBase: Introduction to a Novel Knowledge Database on Brassicaceae Evolution

(2013) Markus Kiefer et al.   PLANT AND CELL PHYSIOLOGY

Transcriptome Sequences Resolve Deep Relationships of the Grape Family

(2013) Jun Wen et al.   PLoS One

Disruption of the petal identity gene APETALA3-3 is highly correlated with loss of petals within the buttercup family (Ranunculaceae)

(2013) R. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The use of the model species Arabidopsis halleri towards phytoextraction of cadmium polluted soils

(2012) Meyer Claire-Lise et al.   New Biotechnology

Highly conserved low-copy nuclear genes as effective markers for phylogenetic analyses in angiosperms

(2012) Ning Zhang et al.   NEW PHYTOLOGIST

Insights into salt tolerance from the genome ofThellungiella salsuginea

(2012) Hua-Jun Wu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Island species radiation and karyotypic stasis in Pachycladon allopolyploids

(2011) Terezie Mandáková et al.   BMC EVOLUTIONARY BIOLOGY

Boechera, a model system for ecological genomics

(2011) CATHERINE A. RUSHWORTH et al.   MOLECULAR ECOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

The genome of the extremophile crucifer Thellungiella parvula

(2011) Maheshi Dassanayake et al.   NATURE GENETICS

The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

(2011) Tina T Hu et al.   NATURE GENETICS

Petal-specific subfunctionalization of an APETALA3 paralog in the Ranunculales and its implications for petal evolution

(2011) Bharti Sharma et al.   NEW PHYTOLOGIST

Comparative Network Analysis Reveals That Tissue Specificity and Gene Function Are Important Factors Influencing the Mode of Expression Evolution in Arabidopsis and Rice

(2011) S. Movahedi et al.   PLANT PHYSIOLOGY

Insights from the Comparison of Plant Genome Sequences

(2010) Andrew H. Paterson et al.   Annual Review of Plant Biology

Analysis of phylogenetic relationships of Brassicaceae species based on Chs sequences

(2010) Bo Zhao et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

Phylogenetic Distribution and Identification of Fin-winged Fruits

(2010) Steven R. Manchester et al.   BOTANICAL REVIEW

Fast Diploidization in Close Mesopolyploid Relatives of Arabidopsis

(2010) T. Mandakova et al.   PLANT CELL

Closing the gaps: phylogenetic relationships in the Brassicaceae based on DNA sequence data of nuclear ribosomal ITS region

(2010) Suzanne I. Warwick et al.   PLANT SYSTEMATICS AND EVOLUTION

An uncorrelated relaxed-clock analysis suggests an earlier origin for flowering plants

(2010) S. A. Smith et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dated molecular phylogenies indicate a Miocene origin for Arabidopsis thaliana

(2010) M. A. Beilstein et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cabbage family affairs: the evolutionary history of Brassicaceae

(2010) Andreas Franzke et al.   TRENDS IN PLANT SCIENCE

Calibrating the Tree of Life: fossils, molecules and evolutionary timescales

(2009) Félix Forest   ANNALS OF BOTANY

Woody Plant Diversity, Evolution, and Ecology in the Tropics: Perspectives from Seasonally Dry Tropical Forests

(2009) R. Toby Pennington et al.   Annual Review of Ecology Evolution and Systematics

Phylogenetic relationships of Old World Brassicaceae from Iran based on nuclear ribosomal DNA sequences

(2009) Ahmad Reza Khosravi et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

HaMStR: Profile hidden markov model based search for orthologs in ESTs

(2009) Ingo Ebersberger et al.   BMC EVOLUTIONARY BIOLOGY

Molecular Phylogenetics, Temporal Diversification, and Principles of Evolution in the Mustard Family (Brassicaceae)

(2009) T. L. P. Couvreur et al.   MOLECULAR BIOLOGY AND EVOLUTION

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Pleistocene inter-tribal allopolyploidization event precedes the species radiation of Pachycladon (Brassicaceae) in New Zealand

(2009) Simon Joly et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Contribution to ITS phylogeny of the Brassicaceae, with special reference to some Asian taxa

(2009) Dmitry A. German et al.   PLANT SYSTEMATICS AND EVOLUTION

Floral induction and monocarpic versus polycarpic life histories

(2009) Richard Amasino   GENOME BIOLOGY

Brassicaceae phylogeny inferred from phytochrome A and ndhF sequence data: tribes and trichomes revisited

(2008) Mark A. Beilstein et al.   AMERICAN JOURNAL OF BOTANY

Angiosperm diversification through time

(2008) Susana Magallón et al.   AMERICAN JOURNAL OF BOTANY

Lepidium as a model system for studying the evolution of fruit development in Brassicaceae

(2008) Klaus Mummenhoff et al.   JOURNAL OF EXPERIMENTAL BOTANY

Calculating Bootstrap Probabilities of Phylogeny Using Multilocus Sequence Data

(2008) T.-K. Seo   MOLECULAR BIOLOGY AND EVOLUTION

An early Cenozoic perspective on greenhouse warming and carbon-cycle dynamics

(2008) James C. Zachos et al.   NATURE

Chromosomal Phylogeny and Karyotype Evolution in x=7 Crucifer Species (Brassicaceae)

(2008) T. Mandakova et al.   PLANT CELL