A Review of the “Omics” Approach to Biomarkers of Oxidative Stress in Oryza sativa

Comparison of GC-MS and NMR for Metabolite Profiling of Rice Subjected to Submergence Stress

(2012) Gregory A. Barding et al.   JOURNAL OF PROTEOME RESEARCH

SteinerNet: a web server for integrating 'omic' data to discover hidden components of response pathways

(2012) N. Tuncbag et al.   NUCLEIC ACIDS RESEARCH

Driving the Cell Cycle Through Metabolism

(2011) Ling Cai et al.   Annual Review of Cell and Developmental Biology

Implications of climate change for diseases, crop yields and food security

(2011) Adrian C. Newton et al.   EUPHYTICA

Advances in Omics and Bioinformatics Tools for Systems Analyses of Plant Functions

(2011) K. Mochida et al.   PLANT AND CELL PHYSIOLOGY

Recent advances of metabolomics in plant biotechnology

(2011) Yozo Okazaki et al.   Plant Biotechnology Reports

Role of peroxidases in the compensation of cytosolic ascorbate peroxidase knockdown in rice plants under abiotic stress

(2011) AURENIVIA BONIFACIO et al.   PLANT CELL AND ENVIRONMENT

Enhanced chilling tolerance at the booting stage in rice by transgenic overexpression of the ascorbate peroxidase gene, OsAPXa

(2011) Yutaka Sato et al.   PLANT CELL REPORTS

Nitric Oxide and Protein S-Nitrosylation Are Integral to Hydrogen Peroxide-Induced Leaf Cell Death in Rice

(2011) A. Lin et al.   PLANT PHYSIOLOGY

Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model

(2010) K. Yizhak et al.   BIOINFORMATICS

Transcriptomic and metabolomic shifts in rice roots in response to Cr (VI) stress

(2010) Sonali Dubey et al.   BMC GENOMICS

Proteomic and Metabolic Profiling of Rice Suspension Culture Cells as a Model to Study Abscisic Acid Signaling Response Pathways in Plants

(2010) Sushma R. Rao et al.   JOURNAL OF PROTEOME RESEARCH

Metabolomic and transcriptomic analysis of the rice response to the bacterial blight pathogen Xanthomonas oryzae pv. oryzae

(2010) Theodore R. Sana et al.   Metabolomics

Reversible and Irreversible Drought-Induced Changes in the Anther Proteome of Rice (Oryza sativa L.) Genotypes IR64 and Moroberekan

(2010) Jian-Xiang Liu et al.   Molecular Plant

The challenges of integrating multi-omic data sets

(2010) Bernhard Palsson et al.   Nature Chemical Biology

NMR-based metabolomic analysis of plants

(2010) Hye Kyong Kim et al.   Nature Protocols

Atlas of Rice Grain Filling-Related Metabolism under High Temperature: Joint Analysis of Metabolome and Transcriptome Demonstrated Inhibition of Starch Accumulation and Induction of Amino Acid Accumulation

(2010) H. Yamakawa et al.   PLANT AND CELL PHYSIOLOGY

Genomics and Bioinformatics Resources for Crop Improvement

(2010) K. Mochida et al.   PLANT AND CELL PHYSIOLOGY

Overexpression of an ERF transcription factorTSRF1improves rice drought tolerance

(2010) Ruidang Quan et al.   PLANT BIOTECHNOLOGY JOURNAL

Metabolome and water homeostasis analysis of Thellungiella salsuginea suggests that dehydration tolerance is a key response to osmotic stress in this halophyte

(2010) Raphaël Lugan et al.   PLANT JOURNAL

A Novel MYBS3-Dependent Pathway Confers Cold Tolerance in Rice

(2010) C. F. Su et al.   PLANT PHYSIOLOGY

Gene Expression Profiles Deciphering Rice Phenotypic Variation between Nipponbare (Japonica) and 93-11 (Indica) during Oxidative Stress

(2010) Fengxia Liu et al.   PLoS One

Integrative analysis of transcriptomic and proteomic data of Desulfovibrio vulgaris: a non-linear model to predict abundance of undetected proteins

(2009) Wandaliz Torres-García et al.   BIOINFORMATICS

Data integration for plant genomics--exemplars from the integration of Arabidopsis thaliana databases

(2009) A. Lysenko et al.   BRIEFINGS IN BIOINFORMATICS

NMR Techniques Coupled with Multivariate Statistical Analysis: Tools to AnalyseOryza sativaMetabolic Content under Stress Conditions

(2009) E. Fumagalli et al.   JOURNAL OF AGRONOMY AND CROP SCIENCE

Comparative proteomic analysis of the short-term responses of rice roots and leaves to cadmium

(2009) Kyunghee Lee et al.   JOURNAL OF PLANT PHYSIOLOGY

Enhanced tolerance to herbicide of rice plants by over-expression of a glutathione S-transferase

(2009) Tingzhang Hu et al.   MOLECULAR BREEDING

NADPH Oxidase-Mediated Reactive Oxygen Species Production: Subcellular Localization and Reassessment of Its Role in Plant Defense

(2009) Jeannine Lherminier et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Metabolome Analysis of Response to Oxidative Stress in Rice Suspension Cells Overexpressing Cell Death Suppressor Bax Inhibitor-1

(2009) Toshiki Ishikawa et al.   PLANT AND CELL PHYSIOLOGY

Defining Core Metabolic and Transcriptomic Responses to Oxygen Availability in Rice Embryos and Young Seedlings

(2009) R. Narsai et al.   PLANT PHYSIOLOGY

Mitochondrial proteome during salt stress-induced programmed cell death in rice

(2009) Xi Chen et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Proteomic and selected metabolite analysis of grape berry tissues under well-watered and water-deficit stress conditions

(2009) Jérôme Grimplet et al.   PROTEOMICS

Quantitative 1H NMR metabolomics reveals extensive metabolic reprogramming of primary and secondary metabolism in elicitor-treated opium poppy cell cultures

(2008) Katherine G Zulak et al.   BMC PLANT BIOLOGY

Time-resolved metabolomics reveals metabolic modulation in rice foliage

(2008) Shigeru Sato et al.   BMC Systems Biology

Metabolite Profiling of Germinating Rice Seeds

(2008) Xiao-Li Shu et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Why are literature data for H2O2 contents so variable? A discussion of potential difficulties in the quantitative assay of leaf extracts

(2008) G. Queval et al.   JOURNAL OF EXPERIMENTAL BOTANY

Chilling stress-induced proteomic changes in rice roots

(2008) Dong-Gi Lee et al.   JOURNAL OF PLANT PHYSIOLOGY

Integrated Transcriptomics, Proteomics, and Metabolomics Analyses To Survey Ozone Responses in the Leaves of Rice Seedling

(2008) Kyoungwon Cho et al.   JOURNAL OF PROTEOME RESEARCH

Quantitative Analysis of Redox-Sensitive Proteome with DIGE and ICAT

(2008) Cexiong Fu et al.   JOURNAL OF PROTEOME RESEARCH

Responses of the pea (Pisum sativum L.) leaf metabolome to drought stress assessed by nuclear magnetic resonance spectroscopy

(2008) Adrian J. Charlton et al.   Metabolomics

The Metabolic Response of Arabidopsis Roots to Oxidative Stress is Distinct from that of Heterotrophic Cells in Culture and Highlights a Complex Relationship between the Levels of Transcripts, Metabolites, and Flux

(2008) Martin Lehmann et al.   Molecular Plant

Refinement of Light-Responsive Transcript Lists Using Rice Oligonucleotide Arrays: Evaluation of Gene-Redundancy

(2008) Ki-Hong Jung et al.   PLoS One